The relationships of groups of organisms as reflected by their genetic makeup.
A theorem in probability theory named for Thomas Bayes (1702-1761). In epidemiology, it is used to obtain the probability of disease in a group of people with some characteristic on the basis of the overall rate of that disease and of the likelihood of that characteristic in healthy and diseased individuals. The most familiar application is in clinical decision analysis where it is used for estimating the probability of a particular diagnosis given the appearance of some symptoms or test result.
A multistage process that includes cloning, physical mapping, subcloning, determination of the DNA SEQUENCE, and information analysis.
The process of cumulative change at the level of DNA; RNA; and PROTEINS, over successive generations.
Theoretical representations that simulate the behavior or activity of genetic processes or phenomena. They include the use of mathematical equations, computers, and other electronic equipment.
Sequential operating programs and data which instruct the functioning of a digital computer.
Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories.
The arrangement of two or more amino acid or base sequences from an organism or organisms in such a way as to align areas of the sequences sharing common properties. The degree of relatedness or homology between the sequences is predicted computationally or statistically based on weights assigned to the elements aligned between the sequences. This in turn can serve as a potential indicator of the genetic relatedness between the organisms.
Functions constructed from a statistical model and a set of observed data which give the probability of that data for various values of the unknown model parameters. Those parameter values that maximize the probability are the maximum likelihood estimates of the parameters.
The sequence of PURINES and PYRIMIDINES in nucleic acids and polynucleotides. It is also called nucleotide sequence.
Remains, impressions, or traces of animals or plants of past geological times which have been preserved in the earth's crust.
A procedure consisting of a sequence of algebraic formulas and/or logical steps to calculate or determine a given task.
A stochastic process such that the conditional probability distribution for a state at any future instant, given the present state, is unaffected by any additional knowledge of the past history of the system.
Constituent of the 40S subunit of eukaryotic ribosomes. 18S rRNA is involved in the initiation of polypeptide synthesis in eukaryotes.
The process of cumulative change over successive generations through which organisms acquire their distinguishing morphological and physiological characteristics.
A field of biology concerned with the development of techniques for the collection and manipulation of biological data, and the use of such data to make biological discoveries or predictions. This field encompasses all computational methods and theories for solving biological problems including manipulation of models and datasets.
Double-stranded DNA of MITOCHONDRIA. In eukaryotes, the mitochondrial GENOME is circular and codes for ribosomal RNAs, transfer RNAs, and about 10 proteins.
DNA sequences encoding RIBOSOMAL RNA and the segments of DNA separating the individual ribosomal RNA genes, referred to as RIBOSOMAL SPACER DNA.
Genotypic differences observed among individuals in a population.
In statistics, a technique for numerically approximating the solution of a mathematical problem by studying the distribution of some random variable, often generated by a computer. The name alludes to the randomness characteristic of the games of chance played at the gambling casinos in Monte Carlo. (From Random House Unabridged Dictionary, 2d ed, 1993)
The order of amino acids as they occur in a polypeptide chain. This is referred to as the primary structure of proteins. It is of fundamental importance in determining PROTEIN CONFORMATION.
Computer-based representation of physical systems and phenomena such as chemical processes.
The systematic study of the complete DNA sequences (GENOME) of organisms.
The addition of descriptive information about the function or structure of a molecular sequence to its MOLECULAR SEQUENCE DATA record.
Databases devoted to knowledge about specific genes and gene products.
Techniques of nucleotide sequence analysis that increase the range, complexity, sensitivity, and accuracy of results by greatly increasing the scale of operations and thus the number of nucleotides, and the number of copies of each nucleotide sequenced. The sequencing may be done by analysis of the synthesis or ligation products, hybridization to preexisting sequences, etc.
The genetic complement of an organism, including all of its GENES, as represented in its DNA, or in some cases, its RNA.
The sequential correspondence of nucleotides in one nucleic acid molecule with those of another nucleic acid molecule. Sequence homology is an indication of the genetic relatedness of different organisms and gene function.
The restriction of a characteristic behavior, anatomical structure or physical system, such as immune response; metabolic response, or gene or gene variant to the members of one species. It refers to that property which differentiates one species from another but it is also used for phylogenetic levels higher or lower than the species.
The intergenic DNA segments that are between the ribosomal RNA genes (internal transcribed spacers) and between the tandemly repeated units of rDNA (external transcribed spacers and nontranscribed spacers).
Databases containing information about NUCLEIC ACIDS such as BASE SEQUENCE; SNPS; NUCLEIC ACID CONFORMATION; and other properties. Information about the DNA fragments kept in a GENE LIBRARY or GENOMIC LIBRARY is often maintained in DNA databases.
Partial cDNA (DNA, COMPLEMENTARY) sequences that are unique to the cDNAs from which they were derived.
Constituent of 30S subunit prokaryotic ribosomes containing 1600 nucleotides and 21 proteins. 16S rRNA is involved in initiation of polypeptide synthesis.
The insertion of recombinant DNA molecules from prokaryotic and/or eukaryotic sources into a replicating vehicle, such as a plasmid or virus vector, and the introduction of the resultant hybrid molecules into recipient cells without altering the viability of those cells.
The systematic arrangement of entities in any field into categories classes based on common characteristics such as properties, morphology, subject matter, etc.
A multistage process that includes the determination of a sequence (protein, carbohydrate, etc.), its fragmentation and analysis, and the interpretation of the resulting sequence information.
A loose confederation of computer communication networks around the world. The networks that make up the Internet are connected through several backbone networks. The Internet grew out of the US Government ARPAnet project and was designed to facilitate information exchange.
The genetic complement of a BACTERIA as represented in its DNA.
Constituent of the 60S subunit of eukaryotic ribosomes. 28S rRNA is involved in the initiation of polypeptide synthesis in eukaryotes.
A field of study concerned with the principles and processes governing the geographic distributions of genealogical lineages, especially those within and among closely related species. (Avise, J.C., Phylogeography: The History and Formation of Species. Harvard University Press, 2000)
A process that includes the determination of AMINO ACID SEQUENCE of a protein (or peptide, oligopeptide or peptide fragment) and the information analysis of the sequence.
Deoxyribonucleic acid that makes up the genetic material of bacteria.
The genetic complement of MITOCHONDRIA as represented in their DNA.
The discipline studying genetic composition of populations and effects of factors such as GENETIC SELECTION, population size, MUTATION, migration, and GENETIC DRIFT on the frequencies of various GENOTYPES and PHENOTYPES using a variety of GENETIC TECHNIQUES.
In vitro method for producing large amounts of specific DNA or RNA fragments of defined length and sequence from small amounts of short oligonucleotide flanking sequences (primers). The essential steps include thermal denaturation of the double-stranded target molecules, annealing of the primers to their complementary sequences, and extension of the annealed primers by enzymatic synthesis with DNA polymerase. The reaction is efficient, specific, and extremely sensitive. Uses for the reaction include disease diagnosis, detection of difficult-to-isolate pathogens, mutation analysis, genetic testing, DNA sequencing, and analyzing evolutionary relationships.
Any method used for determining the location of and relative distances between genes on a chromosome.
The genomic analysis of assemblages of organisms.
A deoxyribonucleotide polymer that is the primary genetic material of all cells. Eukaryotic and prokaryotic organisms normally contain DNA in a double-stranded state, yet several important biological processes transiently involve single-stranded regions. DNA, which consists of a polysugar-phosphate backbone possessing projections of purines (adenine and guanine) and pyrimidines (thymine and cytosine), forms a double helix that is held together by hydrogen bonds between these purines and pyrimidines (adenine to thymine and guanine to cytosine).
The complete genetic complement contained in the DNA of a set of CHROMOSOMES in a HUMAN. The length of the human genome is about 3 billion base pairs.
The degree of similarity between sequences of amino acids. This information is useful for the analyzing genetic relatedness of proteins and species.
Deoxyribonucleic acid that makes up the genetic material of plants.
Extensive collections, reputedly complete, of facts and data garnered from material of a specialized subject area and made available for analysis and application. The collection can be automated by various contemporary methods for retrieval. The concept should be differentiated from DATABASES, BIBLIOGRAPHIC which is restricted to collections of bibliographic references.
The portion of an interactive computer program that issues messages to and receives commands from a user.
A large collection of DNA fragments cloned (CLONING, MOLECULAR) from a given organism, tissue, organ, or cell type. It may contain complete genomic sequences (GENOMIC LIBRARY) or complementary DNA sequences, the latter being formed from messenger RNA and lacking intron sequences.
A set of statistical methods used to group variables or observations into strongly inter-related subgroups. In epidemiology, it may be used to analyze a closely grouped series of events or cases of disease or other health-related phenomenon with well-defined distribution patterns in relation to time or place or both.
That part of the genome that corresponds to the complete complement of EXONS of an organism or cell.
The genetic complement of a plant (PLANTS) as represented in its DNA.
The relative amounts of the PURINES and PYRIMIDINES in a nucleic acid.
A mutation named with the blend of insertion and deletion. It refers to a length difference between two ALLELES where it is unknowable if the difference was originally caused by a SEQUENCE INSERTION or by a SEQUENCE DELETION. If the number of nucleotides in the insertion/deletion is not divisible by three, and it occurs in a protein coding region, it is also a FRAMESHIFT MUTATION.
Deoxyribonucleic acid that makes up the genetic material of fungi.
The splitting of an ancestral species into daughter species that coexist in time (King, Dictionary of Genetics, 6th ed). Causal factors may include geographic isolation, HABITAT geometry, migration, REPRODUCTIVE ISOLATION, random GENETIC DRIFT and MUTATION.
A coordinated effort of researchers to map (CHROMOSOME MAPPING) and sequence (SEQUENCE ANALYSIS, DNA) the human GENOME.
The functional hereditary units of BACTERIA.
Overlapping of cloned or sequenced DNA to construct a continuous region of a gene, chromosome or genome.
A multistage process that includes cloning, physical mapping, subcloning, sequencing, and information analysis of an RNA SEQUENCE.
The genetic constitution of individuals with respect to one member of a pair of allelic genes, or sets of genes that are closely linked and tend to be inherited together such as those of the MAJOR HISTOCOMPATIBILITY COMPLEX.
Constituent of the 60S subunit of eukaryotic ribosomes. 5.8S rRNA is involved in the initiation of polypeptide synthesis in eukaryotes.
A category of nucleic acid sequences that function as units of heredity and which code for the basic instructions for the development, reproduction, and maintenance of organisms.
Organized activities related to the storage, location, search, and retrieval of information.
Software designed to store, manipulate, manage, and control data for specific uses.
A sequence of successive nucleotide triplets that are read as CODONS specifying AMINO ACIDS and begin with an INITIATOR CODON and end with a stop codon (CODON, TERMINATOR).
The science dealing with the earth and its life, especially the description of land, sea, and air and the distribution of plant and animal life, including humanity and human industries with reference to the mutual relations of these elements. (From Webster, 3d ed)
Genes, found in both prokaryotes and eukaryotes, which are transcribed to produce the RNA which is incorporated into RIBOSOMES. Prokaryotic rRNA genes are usually found in OPERONS dispersed throughout the GENOME, whereas eukaryotic rRNA genes are clustered, multicistronic transcriptional units.
Short sequences (generally about 10 base pairs) of DNA that are complementary to sequences of messenger RNA and allow reverse transcriptases to start copying the adjacent sequences of mRNA. Primers are used extensively in genetic and molecular biology techniques.
The complete genetic complement contained in a DNA or RNA molecule in a virus.
Deoxyribonucleic acid that makes up the genetic material of CHLOROPLASTS.
A single nucleotide variation in a genetic sequence that occurs at appreciable frequency in the population.
Single-stranded complementary DNA synthesized from an RNA template by the action of RNA-dependent DNA polymerase. cDNA (i.e., complementary DNA, not circular DNA, not C-DNA) is used in a variety of molecular cloning experiments as well as serving as a specific hybridization probe.
Genes that are located on the MITOCHONDRIAL DNA. Mitochondrial inheritance is often referred to as maternal inheritance but should be differentiated from maternal inheritance that is transmitted chromosomally.
A set of genes descended by duplication and variation from some ancestral gene. Such genes may be clustered together on the same chromosome or dispersed on different chromosomes. Examples of multigene families include those that encode the hemoglobins, immunoglobulins, histocompatibility antigens, actins, tubulins, keratins, collagens, heat shock proteins, salivary glue proteins, chorion proteins, cuticle proteins, yolk proteins, and phaseolins, as well as histones, ribosomal RNA, and transfer RNA genes. The latter three are examples of reiterated genes, where hundreds of identical genes are present in a tandem array. (King & Stanfield, A Dictionary of Genetics, 4th ed)
Information application based on a variety of coding methods to minimize the amount of data to be stored, retrieved, or transmitted. Data compression can be applied to various forms of data, such as images and signals. It is used to reduce costs and increase efficiency in the maintenance of large volumes of data.
One of the three domains of life (the others being Eukarya and ARCHAEA), also called Eubacteria. They are unicellular prokaryotic microorganisms which generally possess rigid cell walls, multiply by cell division, and exhibit three principal forms: round or coccal, rodlike or bacillary, and spiral or spirochetal. Bacteria can be classified by their response to OXYGEN: aerobic, anaerobic, or facultatively anaerobic; by the mode by which they obtain their energy: chemotrophy (via chemical reaction) or PHOTOTROPHY (via light reaction); for chemotrophs by their source of chemical energy: CHEMOLITHOTROPHY (from inorganic compounds) or chemoorganotrophy (from organic compounds); and by their source for CARBON; NITROGEN; etc.; HETEROTROPHY (from organic sources) or AUTOTROPHY (from CARBON DIOXIDE). They can also be classified by whether or not they stain (based on the structure of their CELL WALLS) with CRYSTAL VIOLET dye: gram-negative or gram-positive.
A phylum of fungi which have cross-walls or septa in the mycelium. The perfect state is characterized by the formation of a saclike cell (ascus) containing ascospores. Most pathogenic fungi with a known perfect state belong to this phylum.
Linear POLYPEPTIDES that are synthesized on RIBOSOMES and may be further modified, crosslinked, cleaved, or assembled into complex proteins with several subunits. The specific sequence of AMINO ACIDS determines the shape the polypeptide will take, during PROTEIN FOLDING, and the function of the protein.
The genetic constitution of the individual, comprising the ALLELES present at each GENETIC LOCUS.
Any detectable and heritable change in the genetic material that causes a change in the GENOTYPE and which is transmitted to daughter cells and to succeeding generations.
The degree of similarity between sequences. Studies of AMINO ACID SEQUENCE HOMOLOGY and NUCLEIC ACID SEQUENCE HOMOLOGY provide useful information about the genetic relatedness of genes, gene products, and species.
Differential and non-random reproduction of different genotypes, operating to alter the gene frequencies within a population.
Databases containing information about PROTEINS such as AMINO ACID SEQUENCE; PROTEIN CONFORMATION; and other properties.
A computer in a medical context is an electronic device that processes, stores, and retrieves data, often used in medical settings for tasks such as maintaining patient records, managing diagnostic images, and supporting clinical decision-making through software applications and tools.
Members of the group of vascular plants which bear flowers. They are differentiated from GYMNOSPERMS by their production of seeds within a closed chamber (OVARY, PLANT). The Angiosperms division is composed of two classes, the monocotyledons (Liliopsida) and dicotyledons (Magnoliopsida). Angiosperms represent approximately 80% of all known living plants.
A set of three nucleotides in a protein coding sequence that specifies individual amino acids or a termination signal (CODON, TERMINATOR). Most codons are universal, but some organisms do not produce the transfer RNAs (RNA, TRANSFER) complementary to all codons. These codons are referred to as unassigned codons (CODONS, NONSENSE).
Any of the DNA in between gene-coding DNA, including untranslated regions, 5' and 3' flanking regions, INTRONS, non-functional pseudogenes, and non-functional repetitive sequences. This DNA may or may not encode regulatory functions.
Ribonucleic acid in bacteria having regulatory and catalytic roles as well as involvement in protein synthesis.
Self-replicating cytoplasmic organelles of plant and algal cells that contain pigments and may synthesize and accumulate various substances. PLASTID GENOMES are used in phylogenetic studies.
A phenotypically recognizable genetic trait which can be used to identify a genetic locus, a linkage group, or a recombination event.
The functional hereditary units of PLANTS.
The most abundant form of RNA. Together with proteins, it forms the ribosomes, playing a structural role and also a role in ribosomal binding of mRNA and tRNAs. Individual chains are conventionally designated by their sedimentation coefficients. In eukaryotes, four large chains exist, synthesized in the nucleolus and constituting about 50% of the ribosome. (Dorland, 28th ed)
A sequence of amino acids in a polypeptide or of nucleotides in DNA or RNA that is similar across multiple species. A known set of conserved sequences is represented by a CONSENSUS SEQUENCE. AMINO ACID MOTIFS are often composed of conserved sequences.
The change in gene frequency in a population due to migration of gametes or individuals (ANIMAL MIGRATION) across population barriers. In contrast, in GENETIC DRIFT the cause of gene frequency changes are not a result of population or gamete movement.
Proteins found in any species of bacterium.
A variety of simple repeat sequences that are distributed throughout the GENOME. They are characterized by a short repeat unit of 2-8 basepairs that is repeated up to 100 times. They are also known as short tandem repeats (STRs).
Use of restriction endonucleases to analyze and generate a physical map of genomes, genes, or other segments of DNA.
I'm sorry for any confusion, but there seems to be a misunderstanding as "South America" is not a medical term and cannot have a medical definition. It is a geographical term referring to the southern portion of the American continent, consisting of twelve independent countries and three territories of other nations.
Multicellular, eukaryotic life forms of kingdom Plantae (sensu lato), comprising the VIRIDIPLANTAE; RHODOPHYTA; and GLAUCOPHYTA; all of which acquired chloroplasts by direct endosymbiosis of CYANOBACTERIA. They are characterized by a mainly photosynthetic mode of nutrition; essentially unlimited growth at localized regions of cell divisions (MERISTEMS); cellulose within cells providing rigidity; the absence of organs of locomotion; absence of nervous and sensory systems; and an alternation of haploid and diploid generations.
A collective genome representative of the many organisms, primarily microorganisms, existing in a community.
The process of pictorial communication, between human and computers, in which the computer input and output have the form of charts, drawings, or other appropriate pictorial representation.
A large, subclass of arachnids comprising the MITES and TICKS, including parasites of plants, animals, and humans, as well as several important disease vectors.
Production of new arrangements of DNA by various mechanisms such as assortment and segregation, CROSSING OVER; GENE CONVERSION; GENETIC TRANSFORMATION; GENETIC CONJUGATION; GENETIC TRANSDUCTION; or mixed infection of viruses.
Procedures for identifying types and strains of fungi.
The regular and simultaneous occurrence in a single interbreeding population of two or more discontinuous genotypes. The concept includes differences in genotypes ranging in size from a single nucleotide site (POLYMORPHISM, SINGLE NUCLEOTIDE) to large nucleotide sequences visible at a chromosomal level.
Enzymes that are part of the restriction-modification systems. They catalyze the endonucleolytic cleavage of DNA sequences which lack the species-specific methylation pattern in the host cell's DNA. Cleavage yields random or specific double-stranded fragments with terminal 5'-phosphates. The function of restriction enzymes is to destroy any foreign DNA that invades the host cell. Most have been studied in bacterial systems, but a few have been found in eukaryotic organisms. They are also used as tools for the systematic dissection and mapping of chromosomes, in the determination of base sequences of DNAs, and have made it possible to splice and recombine genes from one organism into the genome of another. EC 3.21.1.
A form of GENE LIBRARY containing the complete DNA sequences present in the genome of a given organism. It contrasts with a cDNA library which contains only sequences utilized in protein coding (lacking introns).
Statistical formulations or analyses which, when applied to data and found to fit the data, are then used to verify the assumptions and parameters used in the analysis. Examples of statistical models are the linear model, binomial model, polynomial model, two-parameter model, etc.
DNA constructs that are composed of, at least, a REPLICATION ORIGIN, for successful replication, propagation to and maintenance as an extra chromosome in bacteria. In addition, they can carry large amounts (about 200 kilobases) of other sequence for a variety of bioengineering purposes.
Techniques for standardizing and expediting taxonomic identification or classification of organisms that are based on deciphering the sequence of one or a few regions of DNA known as the "DNA barcode".
The sequential location of genes on a chromosome.
Integrated set of files, procedures, and equipment for the storage, manipulation, and retrieval of information.
Direct nucleotide sequencing of gene fragments from multiple housekeeping genes for the purpose of phylogenetic analysis, organism identification, and typing of species, strain, serovar, or other distinguishable phylogenetic level.
The variety of all native living organisms and their various forms and interrelationships.
An optical disk storage system for computers on which data can be read or from which data can be retrieved but not entered or modified. A CD-ROM unit is almost identical to the compact disk playback device for home use.
Widely used technique which exploits the ability of complementary sequences in single-stranded DNAs or RNAs to pair with each other to form a double helix. Hybridization can take place between two complimentary DNA sequences, between a single-stranded DNA and a complementary RNA, or between two RNA sequences. The technique is used to detect and isolate specific sequences, measure homology, or define other characteristics of one or both strands. (Kendrew, Encyclopedia of Molecular Biology, 1994, p503)
Sequences of DNA or RNA that occur in multiple copies. There are several types: INTERSPERSED REPETITIVE SEQUENCES are copies of transposable elements (DNA TRANSPOSABLE ELEMENTS or RETROELEMENTS) dispersed throughout the genome. TERMINAL REPEAT SEQUENCES flank both ends of another sequence, for example, the long terminal repeats (LTRs) on RETROVIRUSES. Variations may be direct repeats, those occurring in the same direction, or inverted repeats, those opposite to each other in direction. TANDEM REPEAT SEQUENCES are copies which lie adjacent to each other, direct or inverted (INVERTED REPEAT SEQUENCES).
A genus of the family Lemuridae consisting of five species: L. catta (ring-tailed lemur), L. fulvus, L. macaco (acoumba or black lemur), L. mongoz (mongoose lemur), and L. variegatus (white lemur). Most members of this genus occur in forested areas on Madagascar and the Comoro Islands.
Variant forms of the same gene, occupying the same locus on homologous CHROMOSOMES, and governing the variants in production of the same gene product.
A species of gram-negative, facultatively anaerobic, rod-shaped bacteria (GRAM-NEGATIVE FACULTATIVELY ANAEROBIC RODS) commonly found in the lower part of the intestine of warm-blooded animals. It is usually nonpathogenic, but some strains are known to produce DIARRHEA and pyogenic infections. Pathogenic strains (virotypes) are classified by their specific pathogenic mechanisms such as toxins (ENTEROTOXIGENIC ESCHERICHIA COLI), etc.
The determination of the pattern of genes expressed at the level of GENETIC TRANSCRIPTION, under specific circumstances or in a specific cell.
Short tracts of DNA sequence that are used as landmarks in GENOME mapping. In most instances, 200 to 500 base pairs of sequence define a Sequence Tagged Site (STS) that is operationally unique in the human genome (i.e., can be specifically detected by the polymerase chain reaction in the presence of all other genomic sequences). The overwhelming advantage of STSs over mapping landmarks defined in other ways is that the means of testing for the presence of a particular STS can be completely described as information in a database.
Mapping of the linear order of genes on a chromosome with units indicating their distances by using methods other than genetic recombination. These methods include nucleotide sequencing, overlapping deletions in polytene chromosomes, and electron micrography of heteroduplex DNA. (From King & Stansfield, A Dictionary of Genetics, 5th ed)
The genetic complement of CHLOROPLASTS as represented in their DNA.
The application of molecular biology to the answering of epidemiological questions. The examination of patterns of changes in DNA to implicate particular carcinogens and the use of molecular markers to predict which individuals are at highest risk for a disease are common examples.
A phylum of fungi that produce their sexual spores (basidiospores) on the outside of the basidium. It includes forms commonly known as mushrooms, boletes, puffballs, earthstars, stinkhorns, bird's-nest fungi, jelly fungi, bracket or shelf fungi, and rust and smut fungi.
The outward appearance of the individual. It is the product of interactions between genes, and between the GENOTYPE and the environment.
While there isn't a specific medical definition for "North America," I can provide a geographical definition that is often used in public health and medical contexts: North America is the third largest continent by area, encompassing 23 independent states, including the United States, Canada, and Mexico, which are home to diverse populations, cultures, and ecosystems, and share common health-related challenges such as obesity, diabetes, and healthcare access disparities.
The fruiting 'heads' or 'caps' of FUNGI, which as a food item are familiarly known as MUSHROOMS, that contain the FUNGAL SPORES.
The number of mutations that occur in a specific sequence, GENE, or GENOME over a specified period of time such as years, CELL DIVISIONS, or generations.
The pattern of GENE EXPRESSION at the level of genetic transcription in a specific organism or under specific circumstances in specific cells.

Novel regulation of the homeotic gene Scr associated with a crustacean leg-to-maxilliped appendage transformation. (1/277092)

Homeotic genes are known to be involved in patterning morphological structures along the antero-posterior axis of insects and vertebrates. Because of their important roles in development, changes in the function and expression patterns of homeotic genes may have played a major role in the evolution of different body plans. For example, it has been proposed that during the evolution of several crustacean lineages, changes in the expression patterns of the homeotic genes Ultrabithorax and abdominal-A have played a role in transformation of the anterior thoracic appendages into mouthparts termed maxillipeds. This homeotic-like transformation is recapitulated at the late stages of the direct embryonic development of the crustacean Porcellio scaber (Oniscidea, Isopoda). Interestingly, this morphological change is associated with apparent novelties both in the transcriptional and post-transcriptional regulation of the Porcellio scaber ortholog of the Drosophila homeotic gene, Sex combs reduced (Scr). Specifically, we find that Scr mRNA is present in the second maxillary segment and the first pair of thoracic legs (T1) in early embryos, whereas protein accumulates only in the second maxillae. In later stages, however, high levels of SCR appear in the T1 legs, which correlates temporally with the transformation of these appendages into maxillipeds. Our observations provide further insight into the process of the homeotic leg-to-maxilliped transformation in the evolution of crustaceans and suggest a novel regulatory mechanism for this process in this group of arthropods.  (+info)

The Drosophila kismet gene is related to chromatin-remodeling factors and is required for both segmentation and segment identity. (2/277092)

The Drosophila kismet gene was identified in a screen for dominant suppressors of Polycomb, a repressor of homeotic genes. Here we show that kismet mutations suppress the Polycomb mutant phenotype by blocking the ectopic transcription of homeotic genes. Loss of zygotic kismet function causes homeotic transformations similar to those associated with loss-of-function mutations in the homeotic genes Sex combs reduced and Abdominal-B. kismet is also required for proper larval body segmentation. Loss of maternal kismet function causes segmentation defects similar to those caused by mutations in the pair-rule gene even-skipped. The kismet gene encodes several large nuclear proteins that are ubiquitously expressed along the anterior-posterior axis. The Kismet proteins contain a domain conserved in the trithorax group protein Brahma and related chromatin-remodeling factors, providing further evidence that alterations in chromatin structure are required to maintain the spatially restricted patterns of homeotic gene transcription.  (+info)

The homeobox gene Pitx2: mediator of asymmetric left-right signaling in vertebrate heart and gut looping. (3/277092)

Left-right asymmetry in vertebrates is controlled by activities emanating from the left lateral plate. How these signals get transmitted to the forming organs is not known. A candidate mediator in mouse, frog and zebrafish embryos is the homeobox gene Pitx2. It is asymmetrically expressed in the left lateral plate mesoderm, tubular heart and early gut tube. Localized Pitx2 expression continues when these organs undergo asymmetric looping morphogenesis. Ectopic expression of Xnr1 in the right lateral plate induces Pitx2 transcription in Xenopus. Misexpression of Pitx2 affects situs and morphology of organs. These experiments suggest a role for Pitx2 in promoting looping of the linear heart and gut.  (+info)

Mrj encodes a DnaJ-related co-chaperone that is essential for murine placental development. (4/277092)

We have identified a novel gene in a gene trap screen that encodes a protein related to the DnaJ co-chaperone in E. coli. The gene, named Mrj (mammalian relative of DnaJ) was expressed throughout development in both the embryo and placenta. Within the placenta, expression was particularly high in trophoblast giant cells but moderate levels were also observed in trophoblast cells of the chorion at embryonic day 8.5, and later in the labyrinth which arises from the attachment of the chorion to the allantois (a process called chorioallantoic fusion). Insertion of the ROSAbetageo gene trap vector into the Mrj gene created a null allele. Homozygous Mrj mutants died at mid-gestation due to a failure of chorioallantoic fusion at embryonic day 8.5, which precluded formation of the mature placenta. At embryonic day 8.5, the chorion in mutants was morphologically normal and expressed the cell adhesion molecule beta4 integrin that is known to be required for chorioallantoic fusion. However, expression of the chorionic trophoblast-specific transcription factor genes Err2 and Gcm1 was significantly reduced. The mutants showed no abnormal phenotypes in other trophoblast cell types or in the embryo proper. This study indicates a previously unsuspected role for chaperone proteins in placental development and represents the first genetic analysis of DnaJ-related protein function in higher eukaryotes. Based on a survey of EST databases representing different mouse tissues and embryonic stages, there are 40 or more DnaJ-related genes in mammals. In addition to Mrj, at least two of these genes are also expressed in the developing mouse placenta. The specificity of the developmental defect in Mrj mutants suggests that each of these genes may have unique tissue and cellular activities.  (+info)

A Drosophila doublesex-related gene, terra, is involved in somitogenesis in vertebrates. (5/277092)

The Drosophila doublesex (dsx) gene encodes a transcription factor that mediates sex determination. We describe the characterization of a novel zebrafish zinc-finger gene, terra, which contains a DNA binding domain similar to that of the Drosophila dsx gene. However, unlike dsx, terra is transiently expressed in the presomitic mesoderm and newly formed somites. Expression of terra in presomitic mesoderm is restricted to cells that lack expression of MyoD. In vivo, terra expression is reduced by hedgehog but enhanced by BMP signals. Overexpression of terra induces rapid apoptosis both in vitro and in vivo, suggesting that a tight regulation of terra expression is required during embryogenesis. Terra has both human and mouse homologs and is specifically expressed in mouse somites. Taken together, our findings suggest that terra is a highly conserved protein that plays specific roles in early somitogenesis of vertebrates.  (+info)

Requirement of a novel gene, Xin, in cardiac morphogenesis. (6/277092)

A novel gene, Xin, from chick (cXin) and mouse (mXin) embryonic hearts, may be required for cardiac morphogenesis and looping. Both cloned cDNAs have a single open reading frame, encoding proteins with 2,562 and 1,677 amino acids for cXin and mXin, respectively. The derived amino acid sequences share 46% similarity. The overall domain structures of the predicted cXin and mXin proteins, including proline-rich regions, 16 amino acid repeats, DNA-binding domains, SH3-binding motifs and nuclear localization signals, are highly conserved. Northern blot analyses detect a single message of 8.9 and 5.8 kilo base (kb) from both cardiac and skeletal muscle of chick and mouse, respectively. In situ hybridization reveals that the cXin gene is specifically expressed in cardiac progenitor cells of chick embryos as early as stage 8, prior to heart tube formation. cXin continues to be expressed in the myocardium of developing hearts. By stage 15, cXin expression is also detected in the myotomes of developing somites. Immunofluorescence microscopy reveals that the mXin protein is colocalized with N-cadherin and connexin-43 in the intercalated discs of adult mouse hearts. Incubation of stage 6 chick embryos with cXin antisense oligonucleotides results in abnormal cardiac morphogenesis and an alteration of cardiac looping. The myocardium of the affected hearts becomes thickened and tends to form multiple invaginations into the heart cavity. This abnormal cellular process may account in part for the abnormal looping. cXin expression can be induced by bone morphogenetic protein (BMP) in explants of anterior medial mesoendoderm from stage 6 chick embryos, a tissue that is normally non-cardiogenic. This induction occurs following the BMP-mediated induction of two cardiac-restricted transcription factors, Nkx2.5 and MEF2C. Furthermore, either MEF2C or Nkx2.5 can transactivate a luciferase reporter driven by the mXin promoter in mouse fibroblasts. These results suggest that Xin may participate in a BMP-Nkx2.5-MEF2C pathway to control cardiac morphogenesis and looping.  (+info)

Characterization of an amphioxus paired box gene, AmphiPax2/5/8: developmental expression patterns in optic support cells, nephridium, thyroid-like structures and pharyngeal gill slits, but not in the midbrain-hindbrain boundary region. (7/277092)

On the basis of developmental gene expression, the vertebrate central nervous system comprises: a forebrain plus anterior midbrain, a midbrain-hindbrain boundary region (MHB) having organizer properties, and a rhombospinal domain. The vertebrate MHB is characterized by position, by organizer properties and by being the early site of action of Wnt1 and engrailed genes, and of genes of the Pax2/5/8 subfamily. Wada and others (Wada, H., Saiga, H., Satoh, N. and Holland, P. W. H. (1998) Development 125, 1113-1122) suggested that ascidian tunicates have a vertebrate-like MHB on the basis of ascidian Pax258 expression there. In another invertebrate chordate, amphioxus, comparable gene expression evidence for a vertebrate-like MHB is lacking. We, therefore, isolated and characterized AmphiPax2/5/8, the sole member of this subfamily in amphioxus. AmphiPax2/5/8 is initially expressed well back in the rhombospinal domain and not where a MHB would be expected. In contrast, most of the other expression domains of AmphiPax2/5/8 correspond to expression domains of vertebrate Pax2, Pax5 and Pax8 in structures that are probably homologous - support cells of the eye, nephridium, thyroid-like structures and pharyngeal gill slits; although AmphiPax2/5/8 is not transcribed in any structures that could be interpreted as homologues of vertebrate otic placodes or otic vesicles. In sum, the developmental expression of AmphiPax2/5/8 indicates that the amphioxus central nervous system lacks a MHB resembling the vertebrate isthmic region. Additional gene expression data for the developing ascidian and amphioxus nervous systems would help determine whether a MHB is a basal chordate character secondarily lost in amphioxus. The alternative is that the MHB is a vertebrate innovation.  (+info)

Mechanisms of GDF-5 action during skeletal development. (8/277092)

Mutations in GDF-5, a member of the TGF-beta superfamily, result in the autosomal recessive syndromes brachypod (bp) in mice and Hunter-Thompson and Grebe-type chondrodysplasias in humans. These syndromes are all characterised by the shortening of the appendicular skeleton and loss or abnormal development of some joints. To investigate how GDF-5 controls skeletogenesis, we overexpressed GDF-5 during chick limb development using the retrovirus, RCASBP. This resulted in up to a 37.5% increase in length of the skeletal elements, which was predominantly due to an increase in the number of chondrocytes. By injecting virus at different stages of development, we show that GDF-5 can increase both the size of the early cartilage condensation and the later developing skeletal element. Using in vitro micromass cultures as a model system to study the early steps of chondrogenesis, we show that GDF-5 increases chondrogenesis in a dose-dependent manner. We did not detect changes in proliferation. However, cell suspension cultures showed that GDF-5 might act at these stages by increasing cell adhesion, a critical determinant of early chondrogenesis. In contrast, pulse labelling experiments of GDF-5-infected limbs showed that at later stages of skeletal development GDF-5 can increase proliferation of chondrocytes. Thus, here we show two mechanisms of how GDF-5 may control different stages of skeletogenesis. Finally, our data show that levels of GDF-5 expression/activity are important in controlling the size of skeletal elements and provides a possible explanation for the variation in the severity of skeletal defects resulting from mutations in GDF-5.  (+info)

Phylogeny is the evolutionary history and relationship among biological entities, such as species or genes, based on their shared characteristics. In other words, it refers to the branching pattern of evolution that shows how various organisms have descended from a common ancestor over time. Phylogenetic analysis involves constructing a tree-like diagram called a phylogenetic tree, which depicts the inferred evolutionary relationships among organisms or genes based on molecular sequence data or other types of characters. This information is crucial for understanding the diversity and distribution of life on Earth, as well as for studying the emergence and spread of diseases.

Bayes' theorem, also known as Bayes' rule or Bayes' formula, is a fundamental principle in the field of statistics and probability theory. It describes how to update the probability of a hypothesis based on new evidence or data. The theorem is named after Reverend Thomas Bayes, who first formulated it in the 18th century.

In mathematical terms, Bayes' theorem states that the posterior probability of a hypothesis (H) given some observed evidence (E) is proportional to the product of the prior probability of the hypothesis (P(H)) and the likelihood of observing the evidence given the hypothesis (P(E|H)):

Posterior Probability = P(H|E) = [P(E|H) x P(H)] / P(E)

Where:

* P(H|E): The posterior probability of the hypothesis H after observing evidence E. This is the probability we want to calculate.
* P(E|H): The likelihood of observing evidence E given that the hypothesis H is true.
* P(H): The prior probability of the hypothesis H before observing any evidence.
* P(E): The marginal likelihood or probability of observing evidence E, regardless of whether the hypothesis H is true or not. This value can be calculated as the sum of the products of the likelihood and prior probability for all possible hypotheses: P(E) = Σ[P(E|Hi) x P(Hi)]

Bayes' theorem has many applications in various fields, including medicine, where it can be used to update the probability of a disease diagnosis based on test results or other clinical findings. It is also widely used in machine learning and artificial intelligence algorithms for probabilistic reasoning and decision making under uncertainty.

DNA Sequence Analysis is the systematic determination of the order of nucleotides in a DNA molecule. It is a critical component of modern molecular biology, genetics, and genetic engineering. The process involves determining the exact order of the four nucleotide bases - adenine (A), guanine (G), cytosine (C), and thymine (T) - in a DNA molecule or fragment. This information is used in various applications such as identifying gene mutations, studying evolutionary relationships, developing molecular markers for breeding, and diagnosing genetic diseases.

The process of DNA Sequence Analysis typically involves several steps, including DNA extraction, PCR amplification (if necessary), purification, sequencing reaction, and electrophoresis. The resulting data is then analyzed using specialized software to determine the exact sequence of nucleotides.

In recent years, high-throughput DNA sequencing technologies have revolutionized the field of genomics, enabling the rapid and cost-effective sequencing of entire genomes. This has led to an explosion of genomic data and new insights into the genetic basis of many diseases and traits.

Molecular evolution is the process of change in the DNA sequence or protein structure over time, driven by mechanisms such as mutation, genetic drift, gene flow, and natural selection. It refers to the evolutionary study of changes in DNA, RNA, and proteins, and how these changes accumulate and lead to new species and diversity of life. Molecular evolution can be used to understand the history and relationships among different organisms, as well as the functional consequences of genetic changes.

Genetic models are theoretical frameworks used in genetics to describe and explain the inheritance patterns and genetic architecture of traits, diseases, or phenomena. These models are based on mathematical equations and statistical methods that incorporate information about gene frequencies, modes of inheritance, and the effects of environmental factors. They can be used to predict the probability of certain genetic outcomes, to understand the genetic basis of complex traits, and to inform medical management and treatment decisions.

There are several types of genetic models, including:

1. Mendelian models: These models describe the inheritance patterns of simple genetic traits that follow Mendel's laws of segregation and independent assortment. Examples include autosomal dominant, autosomal recessive, and X-linked inheritance.
2. Complex trait models: These models describe the inheritance patterns of complex traits that are influenced by multiple genes and environmental factors. Examples include heart disease, diabetes, and cancer.
3. Population genetics models: These models describe the distribution and frequency of genetic variants within populations over time. They can be used to study evolutionary processes, such as natural selection and genetic drift.
4. Quantitative genetics models: These models describe the relationship between genetic variation and phenotypic variation in continuous traits, such as height or IQ. They can be used to estimate heritability and to identify quantitative trait loci (QTLs) that contribute to trait variation.
5. Statistical genetics models: These models use statistical methods to analyze genetic data and infer the presence of genetic associations or linkage. They can be used to identify genetic risk factors for diseases or traits.

Overall, genetic models are essential tools in genetics research and medical genetics, as they allow researchers to make predictions about genetic outcomes, test hypotheses about the genetic basis of traits and diseases, and develop strategies for prevention, diagnosis, and treatment.

I am not aware of a widely accepted medical definition for the term "software," as it is more commonly used in the context of computer science and technology. Software refers to programs, data, and instructions that are used by computers to perform various tasks. It does not have direct relevance to medical fields such as anatomy, physiology, or clinical practice. If you have any questions related to medicine or healthcare, I would be happy to try to help with those instead!

Molecular sequence data refers to the specific arrangement of molecules, most commonly nucleotides in DNA or RNA, or amino acids in proteins, that make up a biological macromolecule. This data is generated through laboratory techniques such as sequencing, and provides information about the exact order of the constituent molecules. This data is crucial in various fields of biology, including genetics, evolution, and molecular biology, allowing for comparisons between different organisms, identification of genetic variations, and studies of gene function and regulation.

In genetics, sequence alignment is the process of arranging two or more DNA, RNA, or protein sequences to identify regions of similarity or homology between them. This is often done using computational methods to compare the nucleotide or amino acid sequences and identify matching patterns, which can provide insight into evolutionary relationships, functional domains, or potential genetic disorders. The alignment process typically involves adjusting gaps and mismatches in the sequences to maximize the similarity between them, resulting in an aligned sequence that can be visually represented and analyzed.

"Likelihood functions" is a statistical concept that is used in medical research and other fields to estimate the probability of obtaining a given set of data, given a set of assumptions or parameters. In other words, it is a function that describes how likely it is to observe a particular outcome or result, based on a set of model parameters.

More formally, if we have a statistical model that depends on a set of parameters θ, and we observe some data x, then the likelihood function is defined as:

L(θ | x) = P(x | θ)

This means that the likelihood function describes the probability of observing the data x, given a particular value of the parameter vector θ. By convention, the likelihood function is often expressed as a function of the parameters, rather than the data, so we might instead write:

L(θ) = P(x | θ)

The likelihood function can be used to estimate the values of the model parameters that are most consistent with the observed data. This is typically done by finding the value of θ that maximizes the likelihood function, which is known as the maximum likelihood estimator (MLE). The MLE has many desirable statistical properties, including consistency, efficiency, and asymptotic normality.

In medical research, likelihood functions are often used in the context of Bayesian analysis, where they are combined with prior distributions over the model parameters to obtain posterior distributions that reflect both the observed data and prior knowledge or assumptions about the parameter values. This approach is particularly useful when there is uncertainty or ambiguity about the true value of the parameters, as it allows researchers to incorporate this uncertainty into their analyses in a principled way.

A base sequence in the context of molecular biology refers to the specific order of nucleotides in a DNA or RNA molecule. In DNA, these nucleotides are adenine (A), guanine (G), cytosine (C), and thymine (T). In RNA, uracil (U) takes the place of thymine. The base sequence contains genetic information that is transcribed into RNA and ultimately translated into proteins. It is the exact order of these bases that determines the genetic code and thus the function of the DNA or RNA molecule.

In medical terms, "fossils" do not have a specific or direct relevance to the field. However, in a broader scientific context, fossils are the remains or impressions of prehistoric organisms preserved in petrified form or as a mold or cast in rock. They offer valuable evidence about the Earth's history and the life forms that existed on it millions of years ago.

Paleopathology is a subfield of paleontology that deals with the study of diseases in fossils, which can provide insights into the evolution of diseases and human health over time.

An algorithm is not a medical term, but rather a concept from computer science and mathematics. In the context of medicine, algorithms are often used to describe step-by-step procedures for diagnosing or managing medical conditions. These procedures typically involve a series of rules or decision points that help healthcare professionals make informed decisions about patient care.

For example, an algorithm for diagnosing a particular type of heart disease might involve taking a patient's medical history, performing a physical exam, ordering certain diagnostic tests, and interpreting the results in a specific way. By following this algorithm, healthcare professionals can ensure that they are using a consistent and evidence-based approach to making a diagnosis.

Algorithms can also be used to guide treatment decisions. For instance, an algorithm for managing diabetes might involve setting target blood sugar levels, recommending certain medications or lifestyle changes based on the patient's individual needs, and monitoring the patient's response to treatment over time.

Overall, algorithms are valuable tools in medicine because they help standardize clinical decision-making and ensure that patients receive high-quality care based on the latest scientific evidence.

I'm sorry for any confusion, but "Markov Chains" is a term from the field of mathematics and probability theory, not medicine. Markov Chains are mathematical systems that undergo transitions from one state to another according to certain probabilistic rules. They are named after Russian mathematician Andrey Markov. These chains are used in various fields, including computer science, physics, economics, and engineering, but not commonly in medical definitions or contexts.

18S rRNA (ribosomal RNA) is the smaller subunit of the eukaryotic ribosome, which is the cellular organelle responsible for protein synthesis. The "18S" refers to the sedimentation coefficient of this rRNA molecule, which is a measure of its rate of sedimentation in a centrifuge and is expressed in Svedberg units (S).

The 18S rRNA is a component of the 40S subunit of the ribosome, and it plays a crucial role in the decoding of messenger RNA (mRNA) during protein synthesis. Specifically, the 18S rRNA helps to form the structure of the ribosome and contains several conserved regions that are involved in binding to mRNA and guiding the movement of transfer RNAs (tRNAs) during translation.

The 18S rRNA is also a commonly used molecular marker for evolutionary studies, as its sequence is highly conserved across different species and can be used to infer phylogenetic relationships between organisms. Additionally, the analysis of 18S rRNA gene sequences has been widely used in various fields such as ecology, environmental science, and medicine to study biodiversity, biogeography, and infectious diseases.

Biological evolution is the change in the genetic composition of populations of organisms over time, from one generation to the next. It is a process that results in descendants differing genetically from their ancestors. Biological evolution can be driven by several mechanisms, including natural selection, genetic drift, gene flow, and mutation. These processes can lead to changes in the frequency of alleles (variants of a gene) within populations, resulting in the development of new species and the extinction of others over long periods of time. Biological evolution provides a unifying explanation for the diversity of life on Earth and is supported by extensive evidence from many different fields of science, including genetics, paleontology, comparative anatomy, and biogeography.

Computational biology is a branch of biology that uses mathematical and computational methods to study biological data, models, and processes. It involves the development and application of algorithms, statistical models, and computational approaches to analyze and interpret large-scale molecular and phenotypic data from genomics, transcriptomics, proteomics, metabolomics, and other high-throughput technologies. The goal is to gain insights into biological systems and processes, develop predictive models, and inform experimental design and hypothesis testing in the life sciences. Computational biology encompasses a wide range of disciplines, including bioinformatics, systems biology, computational genomics, network biology, and mathematical modeling of biological systems.

Mitochondrial DNA (mtDNA) is the genetic material present in the mitochondria, which are specialized structures within cells that generate energy. Unlike nuclear DNA, which is present in the cell nucleus and inherited from both parents, mtDNA is inherited solely from the mother.

MtDNA is a circular molecule that contains 37 genes, including 13 genes that encode for proteins involved in oxidative phosphorylation, a process that generates energy in the form of ATP. The remaining genes encode for rRNAs and tRNAs, which are necessary for protein synthesis within the mitochondria.

Mutations in mtDNA can lead to a variety of genetic disorders, including mitochondrial diseases, which can affect any organ system in the body. These mutations can also be used in forensic science to identify individuals and establish biological relationships.

Ribosomal DNA (rDNA) refers to the specific regions of DNA in a cell that contain the genes for ribosomal RNA (rRNA). Ribosomes are complex structures composed of proteins and rRNA, which play a crucial role in protein synthesis by translating messenger RNA (mRNA) into proteins.

In humans, there are four types of rRNA molecules: 18S, 5.8S, 28S, and 5S. These rRNAs are encoded by multiple copies of rDNA genes that are organized in clusters on specific chromosomes. In humans, the majority of rDNA genes are located on the short arms of acrocentric chromosomes 13, 14, 15, 21, and 22.

Each cluster of rDNA genes contains both transcribed and non-transcribed spacer regions. The transcribed regions contain the genes for the four types of rRNA, while the non-transcribed spacers contain regulatory elements that control the transcription of the rRNA genes.

The number of rDNA copies varies between species and even within individuals of the same species. The copy number can also change during development and in response to environmental factors. Variations in rDNA copy number have been associated with various diseases, including cancer and neurological disorders.

Genetic variation refers to the differences in DNA sequences among individuals and populations. These variations can result from mutations, genetic recombination, or gene flow between populations. Genetic variation is essential for evolution by providing the raw material upon which natural selection acts. It can occur within a single gene, between different genes, or at larger scales, such as differences in the number of chromosomes or entire sets of chromosomes. The study of genetic variation is crucial in understanding the genetic basis of diseases and traits, as well as the evolutionary history and relationships among species.

I'm sorry for any confusion, but the "Monte Carlo method" is actually a term from the field of mathematics and computer science, not medicine. It refers to a statistical technique that allows for the modeling of complex systems by running multiple simulations with random inputs. This method is widely used in various fields such as physics, engineering, and finance, but it is not a medical concept or term.

An amino acid sequence is the specific order of amino acids in a protein or peptide molecule, formed by the linking of the amino group (-NH2) of one amino acid to the carboxyl group (-COOH) of another amino acid through a peptide bond. The sequence is determined by the genetic code and is unique to each type of protein or peptide. It plays a crucial role in determining the three-dimensional structure and function of proteins.

A computer simulation is a process that involves creating a model of a real-world system or phenomenon on a computer and then using that model to run experiments and make predictions about how the system will behave under different conditions. In the medical field, computer simulations are used for a variety of purposes, including:

1. Training and education: Computer simulations can be used to create realistic virtual environments where medical students and professionals can practice their skills and learn new procedures without risk to actual patients. For example, surgeons may use simulation software to practice complex surgical techniques before performing them on real patients.
2. Research and development: Computer simulations can help medical researchers study the behavior of biological systems at a level of detail that would be difficult or impossible to achieve through experimental methods alone. By creating detailed models of cells, tissues, organs, or even entire organisms, researchers can use simulation software to explore how these systems function and how they respond to different stimuli.
3. Drug discovery and development: Computer simulations are an essential tool in modern drug discovery and development. By modeling the behavior of drugs at a molecular level, researchers can predict how they will interact with their targets in the body and identify potential side effects or toxicities. This information can help guide the design of new drugs and reduce the need for expensive and time-consuming clinical trials.
4. Personalized medicine: Computer simulations can be used to create personalized models of individual patients based on their unique genetic, physiological, and environmental characteristics. These models can then be used to predict how a patient will respond to different treatments and identify the most effective therapy for their specific condition.

Overall, computer simulations are a powerful tool in modern medicine, enabling researchers and clinicians to study complex systems and make predictions about how they will behave under a wide range of conditions. By providing insights into the behavior of biological systems at a level of detail that would be difficult or impossible to achieve through experimental methods alone, computer simulations are helping to advance our understanding of human health and disease.

Genomics is the scientific study of genes and their functions. It involves the sequencing and analysis of an organism's genome, which is its complete set of DNA, including all of its genes. Genomics also includes the study of how genes interact with each other and with the environment. This field of study can provide important insights into the genetic basis of diseases and can lead to the development of new diagnostic tools and treatments.

Molecular sequence annotation is the process of identifying and describing the characteristics, functional elements, and relevant information of a DNA, RNA, or protein sequence at the molecular level. This process involves marking the location and function of various features such as genes, regulatory regions, coding and non-coding sequences, intron-exon boundaries, promoters, introns, untranslated regions (UTRs), binding sites for proteins or other molecules, and post-translational modifications in a given molecular sequence.

The annotation can be manual, where experts curate and analyze the data to predict features based on biological knowledge and experimental evidence. Alternatively, computational methods using various bioinformatics tools and algorithms can be employed for automated annotation. These tools often rely on comparative analysis, pattern recognition, and machine learning techniques to identify conserved sequence patterns, motifs, or domains that are associated with specific functions.

The annotated molecular sequences serve as valuable resources in genomic and proteomic studies, contributing to the understanding of gene function, evolutionary relationships, disease associations, and biotechnological applications.

A genetic database is a type of biomedical or health informatics database that stores and organizes genetic data, such as DNA sequences, gene maps, genotypes, haplotypes, and phenotype information. These databases can be used for various purposes, including research, clinical diagnosis, and personalized medicine.

There are different types of genetic databases, including:

1. Genomic databases: These databases store whole genome sequences, gene expression data, and other genomic information. Examples include the National Center for Biotechnology Information's (NCBI) GenBank, the European Nucleotide Archive (ENA), and the DNA Data Bank of Japan (DDBJ).
2. Gene databases: These databases contain information about specific genes, including their location, function, regulation, and evolution. Examples include the Online Mendelian Inheritance in Man (OMIM) database, the Universal Protein Resource (UniProt), and the Gene Ontology (GO) database.
3. Variant databases: These databases store information about genetic variants, such as single nucleotide polymorphisms (SNPs), insertions/deletions (INDELs), and copy number variations (CNVs). Examples include the Database of Single Nucleotide Polymorphisms (dbSNP), the Catalogue of Somatic Mutations in Cancer (COSMIC), and the International HapMap Project.
4. Clinical databases: These databases contain genetic and clinical information about patients, such as their genotype, phenotype, family history, and response to treatments. Examples include the ClinVar database, the Pharmacogenomics Knowledgebase (PharmGKB), and the Genetic Testing Registry (GTR).
5. Population databases: These databases store genetic information about different populations, including their ancestry, demographics, and genetic diversity. Examples include the 1000 Genomes Project, the Human Genome Diversity Project (HGDP), and the Allele Frequency Net Database (AFND).

Genetic databases can be publicly accessible or restricted to authorized users, depending on their purpose and content. They play a crucial role in advancing our understanding of genetics and genomics, as well as improving healthcare and personalized medicine.

High-throughput nucleotide sequencing, also known as next-generation sequencing (NGS), refers to a group of technologies that allow for the rapid and parallel determination of nucleotide sequences of DNA or RNA molecules. These techniques enable the sequencing of large numbers of DNA or RNA fragments simultaneously, resulting in the generation of vast amounts of sequence data in a single run.

High-throughput sequencing has revolutionized genomics research by allowing for the rapid and cost-effective sequencing of entire genomes, transcriptomes, and epigenomes. It has numerous applications in basic research, including genome assembly, gene expression analysis, variant detection, and methylation profiling, as well as in clinical settings, such as diagnosis of genetic diseases, identification of pathogens, and monitoring of cancer progression and treatment response.

Some common high-throughput sequencing platforms include Illumina (sequencing by synthesis), Ion Torrent (semiconductor sequencing), Pacific Biosciences (single molecule real-time sequencing), and Oxford Nanopore Technologies (nanopore sequencing). Each platform has its strengths and limitations, and the choice of technology depends on the specific research question and experimental design.

A genome is the complete set of genetic material (DNA, or in some viruses, RNA) present in a single cell of an organism. It includes all of the genes, both coding and noncoding, as well as other regulatory elements that together determine the unique characteristics of that organism. The human genome, for example, contains approximately 3 billion base pairs and about 20,000-25,000 protein-coding genes.

The term "genome" was first coined by Hans Winkler in 1920, derived from the word "gene" and the suffix "-ome," which refers to a complete set of something. The study of genomes is known as genomics.

Understanding the genome can provide valuable insights into the genetic basis of diseases, evolution, and other biological processes. With advancements in sequencing technologies, it has become possible to determine the entire genomic sequence of many organisms, including humans, and use this information for various applications such as personalized medicine, gene therapy, and biotechnology.

Sequence homology in nucleic acids refers to the similarity or identity between the nucleotide sequences of two or more DNA or RNA molecules. It is often used as a measure of biological relationship between genes, organisms, or populations. High sequence homology suggests a recent common ancestry or functional constraint, while low sequence homology may indicate a more distant relationship or different functions.

Nucleic acid sequence homology can be determined by various methods such as pairwise alignment, multiple sequence alignment, and statistical analysis. The degree of homology is typically expressed as a percentage of identical or similar nucleotides in a given window of comparison.

It's important to note that the interpretation of sequence homology depends on the biological context and the evolutionary distance between the sequences compared. Therefore, functional and experimental validation is often necessary to confirm the significance of sequence homology.

Species specificity is a term used in the field of biology, including medicine, to refer to the characteristic of a biological entity (such as a virus, bacterium, or other microorganism) that allows it to interact exclusively or preferentially with a particular species. This means that the biological entity has a strong affinity for, or is only able to infect, a specific host species.

For example, HIV is specifically adapted to infect human cells and does not typically infect other animal species. Similarly, some bacterial toxins are species-specific and can only affect certain types of animals or humans. This concept is important in understanding the transmission dynamics and host range of various pathogens, as well as in developing targeted therapies and vaccines.

The ribosomal spacer in DNA refers to the non-coding sequences of DNA that are located between the genes for ribosomal RNA (rRNA). These spacer regions are present in the DNA of organisms that have a nuclear genome, including humans and other animals, plants, and fungi.

In prokaryotic cells, such as bacteria, there are two ribosomal RNA genes, 16S and 23S, separated by a spacer region known as the intergenic spacer (IGS). In eukaryotic cells, there are multiple copies of ribosomal RNA genes arranged in clusters called nucleolar organizer regions (NORs), which are located on the short arms of several acrocentric chromosomes. Each cluster contains hundreds to thousands of copies of the 18S, 5.8S, and 28S rRNA genes, separated by non-transcribed spacer regions known as internal transcribed spacers (ITS) and external transcribed spacers (ETS).

The ribosomal spacer regions in DNA are often used as molecular markers for studying evolutionary relationships among organisms because they evolve more rapidly than the rRNA genes themselves. The sequences of these spacer regions can be compared among different species to infer their phylogenetic relationships and to estimate the time since they diverged from a common ancestor. Additionally, the length and composition of ribosomal spacers can vary between individuals within a species, making them useful for studying genetic diversity and population structure.

A nucleic acid database is a type of biological database that contains sequence, structure, and functional information about nucleic acids, such as DNA and RNA. These databases are used in various fields of biology, including genomics, molecular biology, and bioinformatics, to store, search, and analyze nucleic acid data.

Some common types of nucleic acid databases include:

1. Nucleotide sequence databases: These databases contain the primary nucleotide sequences of DNA and RNA molecules from various organisms. Examples include GenBank, EMBL-Bank, and DDBJ.
2. Structure databases: These databases contain three-dimensional structures of nucleic acids determined by experimental methods such as X-ray crystallography or nuclear magnetic resonance (NMR) spectroscopy. Examples include the Protein Data Bank (PDB) and the Nucleic Acid Database (NDB).
3. Functional databases: These databases contain information about the functions of nucleic acids, such as their roles in gene regulation, transcription, and translation. Examples include the Gene Ontology (GO) database and the RegulonDB.
4. Genome databases: These databases contain genomic data for various organisms, including whole-genome sequences, gene annotations, and genetic variations. Examples include the Human Genome Database (HGD) and the Ensembl Genome Browser.
5. Comparative databases: These databases allow for the comparison of nucleic acid sequences or structures across different species or conditions. Examples include the Comparative RNA Web (CRW) Site and the Sequence Alignment and Modeling (SAM) system.

Nucleic acid databases are essential resources for researchers to study the structure, function, and evolution of nucleic acids, as well as to develop new tools and methods for analyzing and interpreting nucleic acid data.

Expressed Sequence Tags (ESTs) are short, single-pass DNA sequences that are derived from cDNA libraries. They represent a quick and cost-effective method for large-scale sequencing of gene transcripts and provide an unbiased view of the genes being actively expressed in a particular tissue or developmental stage. ESTs can be used to identify and study new genes, to analyze patterns of gene expression, and to develop molecular markers for genetic mapping and genome analysis.

Ribosomal RNA (rRNA) is a type of RNA that combines with proteins to form ribosomes, which are complex structures inside cells where protein synthesis occurs. The "16S" refers to the sedimentation coefficient of the rRNA molecule, which is a measure of its size and shape. In particular, 16S rRNA is a component of the smaller subunit of the prokaryotic ribosome (found in bacteria and archaea), and is often used as a molecular marker for identifying and classifying these organisms due to its relative stability and conservation among species. The sequence of 16S rRNA can be compared across different species to determine their evolutionary relationships and taxonomic positions.

Molecular cloning is a laboratory technique used to create multiple copies of a specific DNA sequence. This process involves several steps:

1. Isolation: The first step in molecular cloning is to isolate the DNA sequence of interest from the rest of the genomic DNA. This can be done using various methods such as PCR (polymerase chain reaction), restriction enzymes, or hybridization.
2. Vector construction: Once the DNA sequence of interest has been isolated, it must be inserted into a vector, which is a small circular DNA molecule that can replicate independently in a host cell. Common vectors used in molecular cloning include plasmids and phages.
3. Transformation: The constructed vector is then introduced into a host cell, usually a bacterial or yeast cell, through a process called transformation. This can be done using various methods such as electroporation or chemical transformation.
4. Selection: After transformation, the host cells are grown in selective media that allow only those cells containing the vector to grow. This ensures that the DNA sequence of interest has been successfully cloned into the vector.
5. Amplification: Once the host cells have been selected, they can be grown in large quantities to amplify the number of copies of the cloned DNA sequence.

Molecular cloning is a powerful tool in molecular biology and has numerous applications, including the production of recombinant proteins, gene therapy, functional analysis of genes, and genetic engineering.

In the context of medicine, classification refers to the process of categorizing or organizing diseases, disorders, injuries, or other health conditions based on their characteristics, symptoms, causes, or other factors. This helps healthcare professionals to understand, diagnose, and treat various medical conditions more effectively.

There are several well-known classification systems in medicine, such as:

1. The International Classification of Diseases (ICD) - developed by the World Health Organization (WHO), it is used worldwide for mortality and morbidity statistics, reimbursement systems, and automated decision support in health care. This system includes codes for diseases, signs and symptoms, abnormal findings, social circumstances, and external causes of injury or diseases.
2. The Diagnostic and Statistical Manual of Mental Disorders (DSM) - published by the American Psychiatric Association, it provides a standardized classification system for mental health disorders to improve communication between mental health professionals, facilitate research, and guide treatment.
3. The International Classification of Functioning, Disability and Health (ICF) - developed by the WHO, this system focuses on an individual's functioning and disability rather than solely on their medical condition. It covers body functions and structures, activities, and participation, as well as environmental and personal factors that influence a person's life.
4. The TNM Classification of Malignant Tumors - created by the Union for International Cancer Control (UICC), it is used to describe the anatomical extent of cancer, including the size of the primary tumor (T), involvement of regional lymph nodes (N), and distant metastasis (M).

These classification systems help medical professionals communicate more effectively about patients' conditions, make informed treatment decisions, and track disease trends over time.

Sequence analysis in the context of molecular biology and genetics refers to the systematic examination and interpretation of DNA or protein sequences to understand their features, structures, functions, and evolutionary relationships. It involves using various computational methods and bioinformatics tools to compare, align, and analyze sequences to identify patterns, conserved regions, motifs, or mutations that can provide insights into molecular mechanisms, disease associations, or taxonomic classifications.

In a medical context, sequence analysis can be applied to diagnose genetic disorders, predict disease susceptibility, inform treatment decisions, and guide research in personalized medicine. For example, analyzing the sequence of a gene associated with a particular inherited condition can help identify the specific mutation responsible for the disorder, providing valuable information for genetic counseling and family planning. Similarly, comparing the sequences of pathogens from different patients can reveal drug resistance patterns or transmission dynamics, informing infection control strategies and therapeutic interventions.

I'm sorry for any confusion, but "Internet" is a term that pertains to the global network of interconnected computers and servers that enable the transmission and reception of data via the internet protocol (IP). It is not a medical term and does not have a specific medical definition. If you have any questions related to medicine or health, I'd be happy to try to help answer them for you!

A bacterial genome is the complete set of genetic material, including both DNA and RNA, found within a single bacterium. It contains all the hereditary information necessary for the bacterium to grow, reproduce, and survive in its environment. The bacterial genome typically includes circular chromosomes, as well as plasmids, which are smaller, circular DNA molecules that can carry additional genes. These genes encode various functional elements such as enzymes, structural proteins, and regulatory sequences that determine the bacterium's characteristics and behavior.

Bacterial genomes vary widely in size, ranging from around 130 kilobases (kb) in Mycoplasma genitalium to over 14 megabases (Mb) in Sorangium cellulosum. The complete sequencing and analysis of bacterial genomes have provided valuable insights into the biology, evolution, and pathogenicity of bacteria, enabling researchers to better understand their roles in various diseases and potential applications in biotechnology.

28S ribosomal RNA (rRNA) is a component of the large subunit of the eukaryotic ribosome, which is the site of protein synthesis in the cell. The ribosome is composed of two subunits, one large and one small, that come together around an mRNA molecule to translate it into a protein.

The 28S rRNA is a type of rRNA that is found in the large subunit of the eukaryotic ribosome, along with the 5S and 5.8S rRNAs. Together, these rRNAs make up the structural framework of the ribosome and play a crucial role in the process of translation.

The 28S rRNA is synthesized in the nucleolus as a precursor RNA (pre-rRNA) that undergoes several processing steps, including cleavage and modification, to produce the mature 28S rRNA molecule. The length of the 28S rRNA varies between species, but it is typically around 4700-5000 nucleotides long in humans.

Abnormalities in the structure or function of the 28S rRNA can lead to defects in protein synthesis and have been implicated in various diseases, including cancer and neurological disorders.

Phylogeography is not a medical term, but rather a subfield of biogeography and phylogenetics that investigates the spatial distribution of genealogical lineages and the historical processes that have shaped them. It uses genetic data to infer the geographic origins, dispersal routes, and demographic history of organisms, including pathogens and vectors that can affect human health.

In medical and public health contexts, phylogeography is often used to study the spread of infectious diseases, such as HIV/AIDS, influenza, or tuberculosis, by analyzing the genetic diversity and geographic distribution of pathogen isolates. This information can help researchers understand how diseases emerge, evolve, and move across populations and landscapes, which can inform disease surveillance, control, and prevention strategies.

Protein sequence analysis is the systematic examination and interpretation of the amino acid sequence of a protein to understand its structure, function, evolutionary relationships, and other biological properties. It involves various computational methods and tools to analyze the primary structure of proteins, which is the linear arrangement of amino acids along the polypeptide chain.

Protein sequence analysis can provide insights into several aspects, such as:

1. Identification of functional domains, motifs, or sites within a protein that may be responsible for its specific biochemical activities.
2. Comparison of homologous sequences from different organisms to infer evolutionary relationships and determine the degree of similarity or divergence among them.
3. Prediction of secondary and tertiary structures based on patterns of amino acid composition, hydrophobicity, and charge distribution.
4. Detection of post-translational modifications that may influence protein function, localization, or stability.
5. Identification of protease cleavage sites, signal peptides, or other sequence features that play a role in protein processing and targeting.

Some common techniques used in protein sequence analysis include:

1. Multiple Sequence Alignment (MSA): A method to align multiple protein sequences to identify conserved regions, gaps, and variations.
2. BLAST (Basic Local Alignment Search Tool): A widely-used tool for comparing a query protein sequence against a database of known sequences to find similarities and infer function or evolutionary relationships.
3. Hidden Markov Models (HMMs): Statistical models used to describe the probability distribution of amino acid sequences in protein families, allowing for more sensitive detection of remote homologs.
4. Protein structure prediction: Methods that use various computational approaches to predict the three-dimensional structure of a protein based on its amino acid sequence.
5. Phylogenetic analysis: The construction and interpretation of evolutionary trees (phylogenies) based on aligned protein sequences, which can provide insights into the historical relationships among organisms or proteins.

Bacterial DNA refers to the genetic material found in bacteria. It is composed of a double-stranded helix containing four nucleotide bases - adenine (A), thymine (T), guanine (G), and cytosine (C) - that are linked together by phosphodiester bonds. The sequence of these bases in the DNA molecule carries the genetic information necessary for the growth, development, and reproduction of bacteria.

Bacterial DNA is circular in most bacterial species, although some have linear chromosomes. In addition to the main chromosome, many bacteria also contain small circular pieces of DNA called plasmids that can carry additional genes and provide resistance to antibiotics or other environmental stressors.

Unlike eukaryotic cells, which have their DNA enclosed within a nucleus, bacterial DNA is present in the cytoplasm of the cell, where it is in direct contact with the cell's metabolic machinery. This allows for rapid gene expression and regulation in response to changing environmental conditions.

A mitochondrial genome refers to the genetic material present in the mitochondria, which are small organelles found in the cytoplasm of eukaryotic cells (cells with a true nucleus). The mitochondrial genome is typically circular and contains a relatively small number of genes compared to the nuclear genome.

Mitochondrial DNA (mtDNA) encodes essential components of the electron transport chain, which is vital for cellular respiration and energy production. MtDNA also contains genes that code for some mitochondrial tRNAs and rRNAs needed for protein synthesis within the mitochondria.

In humans, the mitochondrial genome is about 16.6 kilobases in length and consists of 37 genes: 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and 13 protein-coding genes. The mitochondrial genome is inherited maternally, as sperm contribute very few or no mitochondria during fertilization. Mutations in the mitochondrial genome can lead to various genetic disorders, often affecting tissues with high energy demands, such as muscle and nerve cells.

Population Genetics is a subfield of genetics that deals with the genetic composition of populations and how this composition changes over time. It involves the study of the frequency and distribution of genes and genetic variations in populations, as well as the evolutionary forces that contribute to these patterns, such as mutation, gene flow, genetic drift, and natural selection.

Population genetics can provide insights into a wide range of topics, including the history and relationships between populations, the genetic basis of diseases and other traits, and the potential impacts of environmental changes on genetic diversity. This field is important for understanding evolutionary processes at the population level and has applications in areas such as conservation biology, medical genetics, and forensic science.

Polymerase Chain Reaction (PCR) is a laboratory technique used to amplify specific regions of DNA. It enables the production of thousands to millions of copies of a particular DNA sequence in a rapid and efficient manner, making it an essential tool in various fields such as molecular biology, medical diagnostics, forensic science, and research.

The PCR process involves repeated cycles of heating and cooling to separate the DNA strands, allow primers (short sequences of single-stranded DNA) to attach to the target regions, and extend these primers using an enzyme called Taq polymerase, resulting in the exponential amplification of the desired DNA segment.

In a medical context, PCR is often used for detecting and quantifying specific pathogens (viruses, bacteria, fungi, or parasites) in clinical samples, identifying genetic mutations or polymorphisms associated with diseases, monitoring disease progression, and evaluating treatment effectiveness.

Chromosome mapping, also known as physical mapping, is the process of determining the location and order of specific genes or genetic markers on a chromosome. This is typically done by using various laboratory techniques to identify landmarks along the chromosome, such as restriction enzyme cutting sites or patterns of DNA sequence repeats. The resulting map provides important information about the organization and structure of the genome, and can be used for a variety of purposes, including identifying the location of genes associated with genetic diseases, studying evolutionary relationships between organisms, and developing genetic markers for use in breeding or forensic applications.

Metagenomics is the scientific study of genetic material recovered directly from environmental samples. This field of research involves analyzing the collective microbial genomes found in a variety of environments, such as soil, ocean water, or the human gut, without the need to culture individual species in a lab. By using high-throughput DNA sequencing technologies and computational tools, metagenomics allows researchers to identify and study the functional potential and ecological roles of diverse microbial communities, contributing to our understanding of their impacts on ecosystems, health, and disease.

Deoxyribonucleic acid (DNA) is the genetic material present in the cells of organisms where it is responsible for the storage and transmission of hereditary information. DNA is a long molecule that consists of two strands coiled together to form a double helix. Each strand is made up of a series of four nucleotide bases - adenine (A), guanine (G), cytosine (C), and thymine (T) - that are linked together by phosphate and sugar groups. The sequence of these bases along the length of the molecule encodes genetic information, with A always pairing with T and C always pairing with G. This base-pairing allows for the replication and transcription of DNA, which are essential processes in the functioning and reproduction of all living organisms.

A human genome is the complete set of genetic information contained within the 23 pairs of chromosomes found in the nucleus of most human cells. It includes all of the genes, which are segments of DNA that contain the instructions for making proteins, as well as non-coding regions of DNA that regulate gene expression and provide structural support to the chromosomes.

The human genome contains approximately 3 billion base pairs of DNA and is estimated to contain around 20,000-25,000 protein-coding genes. The sequencing of the human genome was completed in 2003 as part of the Human Genome Project, which has had a profound impact on our understanding of human biology, disease, and evolution.

Sequence homology, amino acid, refers to the similarity in the order of amino acids in a protein or a portion of a protein between two or more species. This similarity can be used to infer evolutionary relationships and functional similarities between proteins. The higher the degree of sequence homology, the more likely it is that the proteins are related and have similar functions. Sequence homology can be determined through various methods such as pairwise alignment or multiple sequence alignment, which compare the sequences and calculate a score based on the number and type of matching amino acids.

DNA, or deoxyribonucleic acid, is the genetic material present in the cells of all living organisms, including plants. In plants, DNA is located in the nucleus of a cell, as well as in chloroplasts and mitochondria. Plant DNA contains the instructions for the development, growth, and function of the plant, and is passed down from one generation to the next through the process of reproduction.

The structure of DNA is a double helix, formed by two strands of nucleotides that are linked together by hydrogen bonds. Each nucleotide contains a sugar molecule (deoxyribose), a phosphate group, and a nitrogenous base. There are four types of nitrogenous bases in DNA: adenine (A), guanine (G), cytosine (C), and thymine (T). Adenine pairs with thymine, and guanine pairs with cytosine, forming the rungs of the ladder that make up the double helix.

The genetic information in DNA is encoded in the sequence of these nitrogenous bases. Large sequences of bases form genes, which provide the instructions for the production of proteins. The process of gene expression involves transcribing the DNA sequence into a complementary RNA molecule, which is then translated into a protein.

Plant DNA is similar to animal DNA in many ways, but there are also some differences. For example, plant DNA contains a higher proportion of repetitive sequences and transposable elements, which are mobile genetic elements that can move around the genome and cause mutations. Additionally, plant cells have cell walls and chloroplasts, which are not present in animal cells, and these structures contain their own DNA.

A factual database in the medical context is a collection of organized and structured data that contains verified and accurate information related to medicine, healthcare, or health sciences. These databases serve as reliable resources for various stakeholders, including healthcare professionals, researchers, students, and patients, to access evidence-based information for making informed decisions and enhancing knowledge.

Examples of factual medical databases include:

1. PubMed: A comprehensive database of biomedical literature maintained by the US National Library of Medicine (NLM). It contains citations and abstracts from life sciences journals, books, and conference proceedings.
2. MEDLINE: A subset of PubMed, MEDLINE focuses on high-quality, peer-reviewed articles related to biomedicine and health. It is the primary component of the NLM's database and serves as a critical resource for healthcare professionals and researchers worldwide.
3. Cochrane Library: A collection of systematic reviews and meta-analyses focused on evidence-based medicine. The library aims to provide unbiased, high-quality information to support clinical decision-making and improve patient outcomes.
4. OVID: A platform that offers access to various medical and healthcare databases, including MEDLINE, Embase, and PsycINFO. It facilitates the search and retrieval of relevant literature for researchers, clinicians, and students.
5. ClinicalTrials.gov: A registry and results database of publicly and privately supported clinical studies conducted around the world. The platform aims to increase transparency and accessibility of clinical trial data for healthcare professionals, researchers, and patients.
6. UpToDate: An evidence-based, physician-authored clinical decision support resource that provides information on diagnosis, treatment, and prevention of medical conditions. It serves as a point-of-care tool for healthcare professionals to make informed decisions and improve patient care.
7. TRIP Database: A search engine designed to facilitate evidence-based medicine by providing quick access to high-quality resources, including systematic reviews, clinical guidelines, and practice recommendations.
8. National Guideline Clearinghouse (NGC): A database of evidence-based clinical practice guidelines and related documents developed through a rigorous review process. The NGC aims to provide clinicians, healthcare providers, and policymakers with reliable guidance for patient care.
9. DrugBank: A comprehensive, freely accessible online database containing detailed information about drugs, their mechanisms, interactions, and targets. It serves as a valuable resource for researchers, healthcare professionals, and students in the field of pharmacology and drug discovery.
10. Genetic Testing Registry (GTR): A database that provides centralized information about genetic tests, test developers, laboratories offering tests, and clinical validity and utility of genetic tests. It serves as a resource for healthcare professionals, researchers, and patients to make informed decisions regarding genetic testing.

A User-Computer Interface (also known as Human-Computer Interaction) refers to the point at which a person (user) interacts with a computer system. This can include both hardware and software components, such as keyboards, mice, touchscreens, and graphical user interfaces (GUIs). The design of the user-computer interface is crucial in determining the usability and accessibility of a computer system for the user. A well-designed interface should be intuitive, efficient, and easy to use, minimizing the cognitive load on the user and allowing them to effectively accomplish their tasks.

A "gene library" is not a recognized term in medical genetics or molecular biology. However, the closest concept that might be referred to by this term is a "genomic library," which is a collection of DNA clones that represent the entire genetic material of an organism. These libraries are used for various research purposes, such as identifying and studying specific genes or gene functions.

Cluster analysis is a statistical method used to group similar objects or data points together based on their characteristics or features. In medical and healthcare research, cluster analysis can be used to identify patterns or relationships within complex datasets, such as patient records or genetic information. This technique can help researchers to classify patients into distinct subgroups based on their symptoms, diagnoses, or other variables, which can inform more personalized treatment plans or public health interventions.

Cluster analysis involves several steps, including:

1. Data preparation: The researcher must first collect and clean the data, ensuring that it is complete and free from errors. This may involve removing outlier values or missing data points.
2. Distance measurement: Next, the researcher must determine how to measure the distance between each pair of data points. Common methods include Euclidean distance (the straight-line distance between two points) or Manhattan distance (the distance between two points along a grid).
3. Clustering algorithm: The researcher then applies a clustering algorithm, which groups similar data points together based on their distances from one another. Common algorithms include hierarchical clustering (which creates a tree-like structure of clusters) or k-means clustering (which assigns each data point to the nearest centroid).
4. Validation: Finally, the researcher must validate the results of the cluster analysis by evaluating the stability and robustness of the clusters. This may involve re-running the analysis with different distance measures or clustering algorithms, or comparing the results to external criteria.

Cluster analysis is a powerful tool for identifying patterns and relationships within complex datasets, but it requires careful consideration of the data preparation, distance measurement, and validation steps to ensure accurate and meaningful results.

The exome is the part of the genome that contains all the protein-coding regions. It represents less than 2% of the human genome but accounts for about 85% of disease-causing mutations. Exome sequencing, therefore, is a cost-effective and efficient method to identify genetic variants associated with various diseases, including cancer, neurological disorders, and inherited genetic conditions.

A plant genome refers to the complete set of genetic material or DNA present in the cells of a plant. It contains all the hereditary information necessary for the development and functioning of the plant, including its structural and functional characteristics. The plant genome includes both coding regions that contain instructions for producing proteins and non-coding regions that have various regulatory functions.

The plant genome is composed of several types of DNA molecules, including chromosomes, which are located in the nucleus of the cell. Each chromosome contains one or more genes, which are segments of DNA that code for specific proteins or RNA molecules. Plants typically have multiple sets of chromosomes, with each set containing a complete copy of the genome.

The study of plant genomes is an active area of research in modern biology, with important applications in areas such as crop improvement, evolutionary biology, and medical research. Advances in DNA sequencing technologies have made it possible to determine the complete sequences of many plant genomes, providing valuable insights into their structure, function, and evolution.

Base composition in genetics refers to the relative proportion of the four nucleotide bases (adenine, thymine, guanine, and cytosine) in a DNA or RNA molecule. In DNA, adenine pairs with thymine, and guanine pairs with cytosine, so the base composition is often expressed in terms of the ratio of adenine + thymine (A-T) to guanine + cytosine (G-C). This ratio can vary between species and even between different regions of the same genome. The base composition can provide important clues about the function, evolution, and structure of genetic material.

An INDEL (Insertion/Deletion) mutation is a type of genetic alteration in which a small number of nucleotides (the building blocks of DNA) are inserted or deleted from a sequence. This can lead to changes in the resulting protein, potentially causing it to be nonfunctional or altered in its activity. INDEL mutations can have various effects on an organism, depending on their location and size. They are implicated in several genetic disorders and diseases, including certain types of cancer.

Fungal DNA refers to the genetic material present in fungi, which are a group of eukaryotic organisms that include microorganisms such as yeasts and molds, as well as larger organisms like mushrooms. The DNA of fungi, like that of all living organisms, is made up of nucleotides that are arranged in a double helix structure.

Fungal DNA contains the genetic information necessary for the growth, development, and reproduction of fungi. This includes the instructions for making proteins, which are essential for the structure and function of cells, as well as other important molecules such as enzymes and nucleic acids.

Studying fungal DNA can provide valuable insights into the biology and evolution of fungi, as well as their potential uses in medicine, agriculture, and industry. For example, researchers have used genetic engineering techniques to modify the DNA of fungi to produce drugs, biofuels, and other useful products. Additionally, understanding the genetic makeup of pathogenic fungi can help scientists develop new strategies for preventing and treating fungal infections.

Genetic speciation is not a widely used term in the scientific literature, but it generally refers to the process by which new species arise due to genetic differences and reproductive isolation. This process can occur through various mechanisms such as mutation, gene flow, genetic drift, natural selection, or chromosomal changes that lead to the accumulation of genetic differences between populations. Over time, these genetic differences can result in the development of reproductive barriers that prevent interbreeding between the populations, leading to the formation of new species.

In other words, genetic speciation is a type of speciation that involves the evolution of genetic differences that ultimately lead to the formation of new species. It is an essential concept in the field of evolutionary biology and genetics, as it explains how biodiversity arises over time.

The Human Genome Project (HGP) is a large-scale international scientific research effort to determine the base pair sequence of the entire human genome, reveal the locations of every gene, and map all of the genetic components associated with inherited diseases. The project was completed in 2003, two years ahead of its original schedule.

The HGP has significantly advanced our understanding of human genetics, enabled the identification of genetic variations associated with common and complex diseases, and paved the way for personalized medicine. It has also provided a valuable resource for biological and medical research, as well as for forensic science and other applications.

A bacterial gene is a segment of DNA (or RNA in some viruses) that contains the genetic information necessary for the synthesis of a functional bacterial protein or RNA molecule. These genes are responsible for encoding various characteristics and functions of bacteria such as metabolism, reproduction, and resistance to antibiotics. They can be transmitted between bacteria through horizontal gene transfer mechanisms like conjugation, transformation, and transduction. Bacterial genes are often organized into operons, which are clusters of genes that are transcribed together as a single mRNA molecule.

It's important to note that the term "bacterial gene" is used to describe genetic elements found in bacteria, but not all genetic elements in bacteria are considered genes. For example, some DNA sequences may not encode functional products and are therefore not considered genes. Additionally, some bacterial genes may be plasmid-borne or phage-borne, rather than being located on the bacterial chromosome.

Contig mapping, short for contiguous mapping, is a process used in genetics and genomics to construct a detailed map of a particular region or regions of a genome. It involves the use of molecular biology techniques to physically join together, or "clone," overlapping DNA fragments from a specific region of interest in a genome. These joined fragments are called "contigs" because they are continuous and contiguous stretches of DNA that represent a contiguous map of the region.

Contig mapping is often used to study large-scale genetic variations, such as deletions, duplications, or rearrangements, in specific genomic regions associated with diseases or other traits. It can also be used to identify and characterize genes within those regions, which can help researchers understand their function and potential role in disease processes.

The process of contig mapping typically involves several steps, including:

1. DNA fragmentation: The genomic region of interest is broken down into smaller fragments using physical or enzymatic methods.
2. Cloning: The fragments are inserted into a vector, such as a plasmid or bacteriophage, which can be replicated in bacteria to produce multiple copies of each fragment.
3. Library construction: The cloned fragments are pooled together to create a genomic library, which contains all the DNA fragments from the region of interest.
4. Screening and selection: The library is screened using various methods, such as hybridization or PCR, to identify clones that contain overlapping fragments from the region of interest.
5. Contig assembly: The selected clones are ordered based on their overlapping regions to create a contiguous map of the genomic region.
6. Sequencing and analysis: The DNA sequence of the contigs is determined and analyzed to identify genes, regulatory elements, and other features of the genomic region.

Overall, contig mapping is an important tool for studying the structure and function of genomes, and has contributed significantly to our understanding of genetic variation and disease mechanisms.

RNA Sequence Analysis is a branch of bioinformatics that involves the determination and analysis of the nucleotide sequence of Ribonucleic Acid (RNA) molecules. This process includes identifying and characterizing the individual RNA molecules, determining their functions, and studying their evolutionary relationships.

RNA Sequence Analysis typically involves the use of high-throughput sequencing technologies to generate large datasets of RNA sequences, which are then analyzed using computational methods. The analysis may include comparing the sequences to reference databases to identify known RNA molecules or discovering new ones, identifying patterns and features in the sequences, such as motifs or domains, and predicting the secondary and tertiary structures of the RNA molecules.

RNA Sequence Analysis has many applications in basic research, including understanding gene regulation, identifying novel non-coding RNAs, and studying evolutionary relationships between organisms. It also has practical applications in clinical settings, such as diagnosing and monitoring diseases, developing new therapies, and personalized medicine.

A haplotype is a group of genes or DNA sequences that are inherited together from a single parent. It refers to a combination of alleles (variant forms of a gene) that are located on the same chromosome and are usually transmitted as a unit. Haplotypes can be useful in tracing genetic ancestry, understanding the genetic basis of diseases, and developing personalized medical treatments.

In population genetics, haplotypes are often used to study patterns of genetic variation within and between populations. By comparing haplotype frequencies across populations, researchers can infer historical events such as migrations, population expansions, and bottlenecks. Additionally, haplotypes can provide information about the evolutionary history of genes and genomic regions.

In clinical genetics, haplotypes can be used to identify genetic risk factors for diseases or to predict an individual's response to certain medications. For example, specific haplotypes in the HLA gene region have been associated with increased susceptibility to certain autoimmune diseases, while other haplotypes in the CYP450 gene family can affect how individuals metabolize drugs.

Overall, haplotypes provide a powerful tool for understanding the genetic basis of complex traits and diseases, as well as for developing personalized medical treatments based on an individual's genetic makeup.

5.8S ribosomal RNA (rRNA) is a type of structural RNA molecule that is a component of the large subunit of eukaryotic ribosomes. It is one of the several rRNA species that are present in the ribosome, which also include the 18S rRNA in the small subunit and the 28S and 5S rRNAs in the large subunit. The 5.8S rRNA plays a role in the translation process, where it helps in the decoding of messenger RNA (mRNA) during protein synthesis. It is transcribed from DNA as part of a larger precursor RNA molecule, which is then processed to produce the mature 5.8S rRNA. The length of the 5.8S rRNA varies slightly between species, but it is generally around 160 nucleotides long in humans.

A gene is a specific sequence of nucleotides in DNA that carries genetic information. Genes are the fundamental units of heredity and are responsible for the development and function of all living organisms. They code for proteins or RNA molecules, which carry out various functions within cells and are essential for the structure, function, and regulation of the body's tissues and organs.

Each gene has a specific location on a chromosome, and each person inherits two copies of every gene, one from each parent. Variations in the sequence of nucleotides in a gene can lead to differences in traits between individuals, including physical characteristics, susceptibility to disease, and responses to environmental factors.

Medical genetics is the study of genes and their role in health and disease. It involves understanding how genes contribute to the development and progression of various medical conditions, as well as identifying genetic risk factors and developing strategies for prevention, diagnosis, and treatment.

'Information Storage and Retrieval' in the context of medical informatics refers to the processes and systems used for the recording, storing, organizing, protecting, and retrieving electronic health information (e.g., patient records, clinical data, medical images) for various purposes such as diagnosis, treatment planning, research, and education. This may involve the use of electronic health record (EHR) systems, databases, data warehouses, and other digital technologies that enable healthcare providers to access and share accurate, up-to-date, and relevant information about a patient's health status, medical history, and care plan. The goal is to improve the quality, safety, efficiency, and coordination of healthcare delivery by providing timely and evidence-based information to support clinical decision-making and patient engagement.

A Database Management System (DBMS) is a software application that enables users to define, create, maintain, and manipulate databases. It provides a structured way to organize, store, retrieve, and manage data in a digital format. The DBMS serves as an interface between the database and the applications or users that access it, allowing for standardized interactions and data access methods. Common functions of a DBMS include data definition, data manipulation, data security, data recovery, and concurrent data access control. Examples of DBMS include MySQL, Oracle, Microsoft SQL Server, and MongoDB.

An open reading frame (ORF) is a continuous stretch of DNA or RNA sequence that has the potential to be translated into a protein. It begins with a start codon (usually "ATG" in DNA, which corresponds to "AUG" in RNA) and ends with a stop codon ("TAA", "TAG", or "TGA" in DNA; "UAA", "UAG", or "UGA" in RNA). The sequence between these two points is called a coding sequence (CDS), which, when transcribed into mRNA and translated into amino acids, forms a polypeptide chain.

In eukaryotic cells, ORFs can be located in either protein-coding genes or non-coding regions of the genome. In prokaryotic cells, multiple ORFs may be present on a single strand of DNA, often organized into operons that are transcribed together as a single mRNA molecule.

It's important to note that not all ORFs necessarily represent functional proteins; some may be pseudogenes or result from errors in genome annotation. Therefore, additional experimental evidence is typically required to confirm the expression and functionality of a given ORF.

I'm sorry for any confusion, but "geography" is not a term that has a medical definition. Geography is a field of study that deals with the location and distribution of physical and cultural features on Earth's surface, as well as how humans interact with and affect those features. It is not a concept that is typically used in a medical context. If you have any questions related to medicine or healthcare, I would be happy to try to help answer them for you!

rRNA (ribosomal RNA) is not a type of gene itself, but rather a crucial component that is transcribed from genes known as ribosomal DNA (rDNA). In cells, rRNA plays an essential role in protein synthesis by assembling with ribosomal proteins to form ribosomes. Ribosomes are complex structures where the translation of mRNA into proteins occurs. There are multiple types of rRNA molecules, including 5S, 5.8S, 18S, and 28S rRNAs in eukaryotic cells, each with specific functions during protein synthesis.

In summary, 'Genes, rRNA' would refer to the genetic regions (genes) that code for ribosomal RNA molecules, which are vital components of the protein synthesis machinery within cells.

DNA primers are short single-stranded DNA molecules that serve as a starting point for DNA synthesis. They are typically used in laboratory techniques such as the polymerase chain reaction (PCR) and DNA sequencing. The primer binds to a complementary sequence on the DNA template through base pairing, providing a free 3'-hydroxyl group for the DNA polymerase enzyme to add nucleotides and synthesize a new strand of DNA. This allows for specific and targeted amplification or analysis of a particular region of interest within a larger DNA molecule.

A viral genome is the genetic material (DNA or RNA) that is present in a virus. It contains all the genetic information that a virus needs to replicate itself and infect its host. The size and complexity of viral genomes can vary greatly, ranging from a few thousand bases to hundreds of thousands of bases. Some viruses have linear genomes, while others have circular genomes. The genome of a virus also contains the information necessary for the virus to hijack the host cell's machinery and use it to produce new copies of the virus. Understanding the genetic makeup of viruses is important for developing vaccines and antiviral treatments.

Chloroplast DNA (cpDNA) refers to the genetic material present in the chloroplasts, which are organelles found in the cells of photosynthetic organisms such as plants, algae, and some bacteria. Chloroplasts are responsible for capturing sunlight energy and converting it into chemical energy through the process of photosynthesis.

Chloroplast DNA is circular and contains a small number of genes compared to the nuclear genome. It encodes for some of the essential components required for chloroplast function, including proteins involved in photosynthesis, transcription, and translation. The majority of chloroplast proteins are encoded by the nuclear genome and are imported into the chloroplast after being synthesized in the cytoplasm.

Chloroplast DNA is inherited maternally in most plants, meaning that it is passed down from the maternal parent to their offspring through the egg cell. This mode of inheritance has been used in plant breeding and genetic engineering to introduce desirable traits into crops.

Single Nucleotide Polymorphism (SNP) is a type of genetic variation that occurs when a single nucleotide (A, T, C, or G) in the DNA sequence is altered. This alteration must occur in at least 1% of the population to be considered a SNP. These variations can help explain why some people are more susceptible to certain diseases than others and can also influence how an individual responds to certain medications. SNPs can serve as biological markers, helping scientists locate genes that are associated with disease. They can also provide information about an individual's ancestry and ethnic background.

Complementary DNA (cDNA) is a type of DNA that is synthesized from a single-stranded RNA molecule through the process of reverse transcription. In this process, the enzyme reverse transcriptase uses an RNA molecule as a template to synthesize a complementary DNA strand. The resulting cDNA is therefore complementary to the original RNA molecule and is a copy of its coding sequence, but it does not contain non-coding regions such as introns that are present in genomic DNA.

Complementary DNA is often used in molecular biology research to study gene expression, protein function, and other genetic phenomena. For example, cDNA can be used to create cDNA libraries, which are collections of cloned cDNA fragments that represent the expressed genes in a particular cell type or tissue. These libraries can then be screened for specific genes or gene products of interest. Additionally, cDNA can be used to produce recombinant proteins in heterologous expression systems, allowing researchers to study the structure and function of proteins that may be difficult to express or purify from their native sources.

Mitochondrial genes are a type of gene that is located in the DNA (deoxyribonucleic acid) found in the mitochondria, which are small organelles present in the cytoplasm of eukaryotic cells (cells with a true nucleus). Mitochondria are responsible for generating energy for the cell through a process called oxidative phosphorylation.

The human mitochondrial genome is a circular DNA molecule that contains 37 genes, including 13 genes that encode for proteins involved in oxidative phosphorylation, 22 genes that encode for transfer RNAs (tRNAs), and 2 genes that encode for ribosomal RNAs (rRNAs). Mutations in mitochondrial genes can lead to a variety of inherited mitochondrial disorders, which can affect any organ system in the body and can present at any age.

Mitochondrial DNA is maternally inherited, meaning that it is passed down from the mother to her offspring through the egg cell. This is because during fertilization, only the sperm's nucleus enters the egg, while the mitochondria remain outside. As a result, all of an individual's mitochondrial DNA comes from their mother.

A multigene family is a group of genetically related genes that share a common ancestry and have similar sequences or structures. These genes are arranged in clusters on a chromosome and often encode proteins with similar functions. They can arise through various mechanisms, including gene duplication, recombination, and transposition. Multigene families play crucial roles in many biological processes, such as development, immunity, and metabolism. Examples of multigene families include the globin genes involved in oxygen transport, the immune system's major histocompatibility complex (MHC) genes, and the cytochrome P450 genes associated with drug metabolism.

Data compression, in the context of medical informatics, refers to the process of encoding data to reduce its size while maintaining its integrity and accuracy. This technique is commonly used in transmitting and storing large datasets, such as medical images or genetic sequences, where smaller file sizes can significantly improve efficiency and speed up processing times.

There are two main types of data compression: lossless and lossy. Lossless compression ensures that the original data can be reconstructed exactly from the compressed data, making it essential for applications where data accuracy is critical, such as medical imaging or electronic health records. On the other hand, lossy compression involves discarding some redundant or less important data to achieve higher compression rates, but at the cost of reduced data quality.

In summary, data compression in a medical context refers to the process of reducing the size of digital data while maintaining its accuracy and integrity, which can improve efficiency in data transmission and storage.

Bacteria are single-celled microorganisms that are among the earliest known life forms on Earth. They are typically characterized as having a cell wall and no membrane-bound organelles. The majority of bacteria have a prokaryotic organization, meaning they lack a nucleus and other membrane-bound organelles.

Bacteria exist in diverse environments and can be found in every habitat on Earth, including soil, water, and the bodies of plants and animals. Some bacteria are beneficial to their hosts, while others can cause disease. Beneficial bacteria play important roles in processes such as digestion, nitrogen fixation, and biogeochemical cycling.

Bacteria reproduce asexually through binary fission or budding, and some species can also exchange genetic material through conjugation. They have a wide range of metabolic capabilities, with many using organic compounds as their source of energy, while others are capable of photosynthesis or chemosynthesis.

Bacteria are highly adaptable and can evolve rapidly in response to environmental changes. This has led to the development of antibiotic resistance in some species, which poses a significant public health challenge. Understanding the biology and behavior of bacteria is essential for developing strategies to prevent and treat bacterial infections and diseases.

Ascomycota is a phylum in the kingdom Fungi, also known as sac fungi. This group includes both unicellular and multicellular organisms, such as yeasts, mold species, and morel mushrooms. Ascomycetes are characterized by their reproductive structures called ascus, which contain typically eight haploid spores produced sexually through a process called ascogony. Some members of this phylum have significant ecological and economic importance, as they can be decomposers, mutualistic symbionts, or plant pathogens causing various diseases. Examples include the baker's yeast Saccharomyces cerevisiae, ergot fungus Claviceps purpurea, and morel mushroom Morchella esculenta.

Proteins are complex, large molecules that play critical roles in the body's functions. They are made up of amino acids, which are organic compounds that are the building blocks of proteins. Proteins are required for the structure, function, and regulation of the body's tissues and organs. They are essential for the growth, repair, and maintenance of body tissues, and they play a crucial role in many biological processes, including metabolism, immune response, and cellular signaling. Proteins can be classified into different types based on their structure and function, such as enzymes, hormones, antibodies, and structural proteins. They are found in various foods, especially animal-derived products like meat, dairy, and eggs, as well as plant-based sources like beans, nuts, and grains.

Genotype, in genetics, refers to the complete heritable genetic makeup of an individual organism, including all of its genes. It is the set of instructions contained in an organism's DNA for the development and function of that organism. The genotype is the basis for an individual's inherited traits, and it can be contrasted with an individual's phenotype, which refers to the observable physical or biochemical characteristics of an organism that result from the expression of its genes in combination with environmental influences.

It is important to note that an individual's genotype is not necessarily identical to their genetic sequence. Some genes have multiple forms called alleles, and an individual may inherit different alleles for a given gene from each parent. The combination of alleles that an individual inherits for a particular gene is known as their genotype for that gene.

Understanding an individual's genotype can provide important information about their susceptibility to certain diseases, their response to drugs and other treatments, and their risk of passing on inherited genetic disorders to their offspring.

A mutation is a permanent change in the DNA sequence of an organism's genome. Mutations can occur spontaneously or be caused by environmental factors such as exposure to radiation, chemicals, or viruses. They may have various effects on the organism, ranging from benign to harmful, depending on where they occur and whether they alter the function of essential proteins. In some cases, mutations can increase an individual's susceptibility to certain diseases or disorders, while in others, they may confer a survival advantage. Mutations are the driving force behind evolution, as they introduce new genetic variability into populations, which can then be acted upon by natural selection.

Sequence homology is a term used in molecular biology to describe the similarity between the nucleotide or amino acid sequences of two or more genes or proteins. It is a measure of the degree to which the sequences are related, indicating a common evolutionary origin.

In other words, sequence homology implies that the compared sequences have a significant number of identical or similar residues in the same order, suggesting that they share a common ancestor and have diverged over time through processes such as mutation, insertion, deletion, or rearrangement. The higher the degree of sequence homology, the more closely related the sequences are likely to be.

Sequence homology is often used to identify similarities between genes or proteins from different species, which can provide valuable insights into their functions, structures, and evolutionary relationships. It is commonly assessed using various bioinformatics tools and algorithms, such as BLAST (Basic Local Alignment Search Tool), Clustal Omega, and multiple sequence alignment (MSA) methods.

Genetic selection, also known as natural selection, is a fundamental mechanism of evolution. It refers to the process by which certain heritable traits become more or less common in a population over successive generations due to differential reproduction of organisms with those traits.

In genetic selection, traits that increase an individual's fitness (its ability to survive and reproduce) are more likely to be passed on to the next generation, while traits that decrease fitness are less likely to be passed on. This results in a gradual change in the distribution of traits within a population over time, leading to adaptation to the environment and potentially speciation.

Genetic selection can occur through various mechanisms, including viability selection (differential survival), fecundity selection (differences in reproductive success), and sexual selection (choices made by individuals during mating). The process of genetic selection is driven by environmental pressures, such as predation, competition for resources, and changes in the availability of food or habitat.

A protein database is a type of biological database that contains information about proteins and their structures, functions, sequences, and interactions with other molecules. These databases can include experimentally determined data, such as protein sequences derived from DNA sequencing or mass spectrometry, as well as predicted data based on computational methods.

Some examples of protein databases include:

1. UniProtKB: a comprehensive protein database that provides information about protein sequences, functions, and structures, as well as literature references and links to other resources.
2. PDB (Protein Data Bank): a database of three-dimensional protein structures determined by experimental methods such as X-ray crystallography and nuclear magnetic resonance (NMR) spectroscopy.
3. BLAST (Basic Local Alignment Search Tool): a web-based tool that allows users to compare a query protein sequence against a protein database to identify similar sequences and potential functional relationships.
4. InterPro: a database of protein families, domains, and functional sites that provides information about protein function based on sequence analysis and other data.
5. STRING (Search Tool for the Retrieval of Interacting Genes/Proteins): a database of known and predicted protein-protein interactions, including physical and functional associations.

Protein databases are essential tools in proteomics research, enabling researchers to study protein function, evolution, and interaction networks on a large scale.

A computer is a programmable electronic device that can store, retrieve, and process data. It is composed of several components including:

1. Hardware: The physical components of a computer such as the central processing unit (CPU), memory (RAM), storage devices (hard drive or solid-state drive), and input/output devices (monitor, keyboard, and mouse).
2. Software: The programs and instructions that are used to perform specific tasks on a computer. This includes operating systems, applications, and utilities.
3. Input: Devices or methods used to enter data into a computer, such as a keyboard, mouse, scanner, or digital camera.
4. Processing: The function of the CPU in executing instructions and performing calculations on data.
5. Output: The results of processing, which can be displayed on a monitor, printed on paper, or saved to a storage device.

Computers come in various forms and sizes, including desktop computers, laptops, tablets, and smartphones. They are used in a wide range of applications, from personal use for communication, entertainment, and productivity, to professional use in fields such as medicine, engineering, finance, and education.

Angiosperms, also known as flowering plants, are a group of plants that produce seeds enclosed within an ovary. The term "angiosperm" comes from the Greek words "angeion," meaning "case" or "capsule," and "sperma," meaning "seed." This group includes the majority of plant species, with over 300,000 known species.

Angiosperms are characterized by their reproductive structures, which consist of flowers. The flower contains male and female reproductive organs, including stamens (which produce pollen) and carpels (which contain the ovules). After fertilization, the ovule develops into a seed, while the ovary matures into a fruit, which provides protection and nutrition for the developing embryo.

Angiosperms are further divided into two main groups: monocots and eudicots. Monocots have one cotyledon or embryonic leaf, while eudicots have two. Examples of monocots include grasses, lilies, and orchids, while examples of eudicots include roses, sunflowers, and legumes.

Angiosperms are ecologically and economically important, providing food, shelter, and other resources for many organisms, including humans. They have evolved a wide range of adaptations to different environments, from the desert to the ocean floor, making them one of the most diverse and successful groups of plants on Earth.

A codon is a sequence of three adjacent nucleotides in DNA or RNA that specifies the insertion of a particular amino acid during protein synthesis, or signals the beginning or end of translation. In DNA, these triplets are read during transcription to produce a complementary mRNA molecule, which is then translated into a polypeptide chain during translation. There are 64 possible codons in the standard genetic code, with 61 encoding for specific amino acids and three serving as stop codons that signal the termination of protein synthesis.

Intergenic DNA refers to the stretches of DNA that are located between genes. These regions do not contain coding sequences for proteins or RNA and thus were once thought to be "junk" DNA with no function. However, recent research has shown that intergenic DNA can play important roles in the regulation of gene expression, chromosome structure and stability, and other cellular processes. Intergenic DNA may contain various types of regulatory elements such as enhancers, silencers, insulators, and promoters that control the transcription of nearby genes. Additionally, intergenic DNA can also include repetitive sequences, transposable elements, and other non-coding RNAs that have diverse functions in the cell.

Bacterial RNA refers to the genetic material present in bacteria that is composed of ribonucleic acid (RNA). Unlike higher organisms, bacteria contain a single circular chromosome made up of DNA, along with smaller circular pieces of DNA called plasmids. These bacterial genetic materials contain the information necessary for the growth and reproduction of the organism.

Bacterial RNA can be divided into three main categories: messenger RNA (mRNA), ribosomal RNA (rRNA), and transfer RNA (tRNA). mRNA carries genetic information copied from DNA, which is then translated into proteins by the rRNA and tRNA molecules. rRNA is a structural component of the ribosome, where protein synthesis occurs, while tRNA acts as an adapter that brings amino acids to the ribosome during protein synthesis.

Bacterial RNA plays a crucial role in various cellular processes, including gene expression, protein synthesis, and regulation of metabolic pathways. Understanding the structure and function of bacterial RNA is essential for developing new antibiotics and other therapeutic strategies to combat bacterial infections.

Plastids are membrane-bound organelles found in the cells of plants and algae. They are responsible for various cellular functions, including photosynthesis, storage of starch, lipids, and proteins, and the production of pigments that give plants their color. The most common types of plastids are chloroplasts (which contain chlorophyll and are involved in photosynthesis), chromoplasts (which contain pigments such as carotenoids and are responsible for the yellow, orange, and red colors of fruits and flowers), and leucoplasts (which do not contain pigments and serve mainly as storage organelles). Plastids have their own DNA and can replicate themselves within the cell.

Genetic markers are specific segments of DNA that are used in genetic mapping and genotyping to identify specific genetic locations, diseases, or traits. They can be composed of short tandem repeats (STRs), single nucleotide polymorphisms (SNPs), restriction fragment length polymorphisms (RFLPs), or variable number tandem repeats (VNTRs). These markers are useful in various fields such as genetic research, medical diagnostics, forensic science, and breeding programs. They can help to track inheritance patterns, identify genetic predispositions to diseases, and solve crimes by linking biological evidence to suspects or victims.

A gene in plants, like in other organisms, is a hereditary unit that carries genetic information from one generation to the next. It is a segment of DNA (deoxyribonucleic acid) that contains the instructions for the development and function of an organism. Genes in plants determine various traits such as flower color, plant height, resistance to diseases, and many others. They are responsible for encoding proteins and RNA molecules that play crucial roles in the growth, development, and reproduction of plants. Plant genes can be manipulated through traditional breeding methods or genetic engineering techniques to improve crop yield, enhance disease resistance, and increase nutritional value.

Ribosomal RNA (rRNA) is a type of RNA molecule that is a key component of ribosomes, which are the cellular structures where protein synthesis occurs in cells. In ribosomes, rRNA plays a crucial role in the process of translation, where genetic information from messenger RNA (mRNA) is translated into proteins.

Ribosomal RNA is synthesized in the nucleus and then transported to the cytoplasm, where it assembles with ribosomal proteins to form ribosomes. Within the ribosome, rRNA provides a structural framework for the assembly of the ribosome and also plays an active role in catalyzing the formation of peptide bonds between amino acids during protein synthesis.

There are several different types of rRNA molecules, including 5S, 5.8S, 18S, and 28S rRNA, which vary in size and function. These rRNA molecules are highly conserved across different species, indicating their essential role in protein synthesis and cellular function.

A conserved sequence in the context of molecular biology refers to a pattern of nucleotides (in DNA or RNA) or amino acids (in proteins) that has remained relatively unchanged over evolutionary time. These sequences are often functionally important and are highly conserved across different species, indicating strong selection pressure against changes in these regions.

In the case of protein-coding genes, the corresponding amino acid sequence is deduced from the DNA sequence through the genetic code. Conserved sequences in proteins may indicate structurally or functionally important regions, such as active sites or binding sites, that are critical for the protein's activity. Similarly, conserved non-coding sequences in DNA may represent regulatory elements that control gene expression.

Identifying conserved sequences can be useful for inferring evolutionary relationships between species and for predicting the function of unknown genes or proteins.

Gene flow, also known as genetic migration or gene admixture, refers to the transfer of genetic variation from one population to another. It occurs when individuals reproduce and exchange genes with members of other populations through processes such as migration and interbreeding. This can result in an alteration of the genetic composition of both populations, increasing genetic diversity and reducing the differences between them. Gene flow is an important mechanism in evolutionary biology and population genetics, contributing to the distribution and frequency of alleles (versions of a gene) within and across populations.

Bacterial proteins are a type of protein that are produced by bacteria as part of their structural or functional components. These proteins can be involved in various cellular processes, such as metabolism, DNA replication, transcription, and translation. They can also play a role in bacterial pathogenesis, helping the bacteria to evade the host's immune system, acquire nutrients, and multiply within the host.

Bacterial proteins can be classified into different categories based on their function, such as:

1. Enzymes: Proteins that catalyze chemical reactions in the bacterial cell.
2. Structural proteins: Proteins that provide structural support and maintain the shape of the bacterial cell.
3. Signaling proteins: Proteins that help bacteria to communicate with each other and coordinate their behavior.
4. Transport proteins: Proteins that facilitate the movement of molecules across the bacterial cell membrane.
5. Toxins: Proteins that are produced by pathogenic bacteria to damage host cells and promote infection.
6. Surface proteins: Proteins that are located on the surface of the bacterial cell and interact with the environment or host cells.

Understanding the structure and function of bacterial proteins is important for developing new antibiotics, vaccines, and other therapeutic strategies to combat bacterial infections.

Microsatellite repeats, also known as short tandem repeats (STRs), are repetitive DNA sequences made up of units of 1-6 base pairs that are repeated in a head-to-tail manner. These repeats are spread throughout the human genome and are highly polymorphic, meaning they can have different numbers of repeat units in different individuals.

Microsatellites are useful as genetic markers because of their high degree of variability. They are commonly used in forensic science to identify individuals, in genealogy to trace ancestry, and in medical research to study genetic diseases and disorders. Mutations in microsatellite repeats have been associated with various neurological conditions, including Huntington's disease and fragile X syndrome.

Restriction mapping is a technique used in molecular biology to identify the location and arrangement of specific restriction endonuclease recognition sites within a DNA molecule. Restriction endonucleases are enzymes that cut double-stranded DNA at specific sequences, producing fragments of various lengths. By digesting the DNA with different combinations of these enzymes and analyzing the resulting fragment sizes through techniques such as agarose gel electrophoresis, researchers can generate a restriction map - a visual representation of the locations and distances between recognition sites on the DNA molecule. This information is crucial for various applications, including cloning, genome analysis, and genetic engineering.

I'm sorry for any confusion, but "South America" is not a medical term. It is a geographical term that refers to the southern portion of the Americas, which is a continent in the Western Hemisphere. South America is generally defined as including the countries of Argentina, Bolivia, Brazil, Chile, Colombia, Ecuador, Guyana, Paraguay, Peru, Suriname, Uruguay, and Venezuela, as well as the overseas departments and territories of French Guiana (France), and the Falkland Islands (UK).

If you have any questions related to medical terminology or health-related topics, I would be happy to help answer them for you.

I apologize for any confusion, but "plants" is not a term that has a medical definition. The term "plants" refers to a large and diverse group of organisms that obtain their energy through photosynthesis, which is the process of converting sunlight into chemical energy. Plants are typically characterized by having cells with cell walls containing cellulose, chloroplasts containing the pigment chlorophyll, and the ability to synthesize their own food through photosynthesis.

In a medical or biological context, you might be thinking of "plant-based" or "phytomedicine," which refer to the use of plants or plant extracts as a form of medicine or treatment. Phytomedicines have been used for thousands of years in many traditional systems of medicine, and some plant-derived compounds have been found to have therapeutic benefits in modern medicine as well. However, "plants" itself does not have a medical definition.

A metagenome is the collective genetic material contained within a sample taken from a specific environment, such as soil or water, or within a community of organisms, like the microbiota found in the human gut. It includes the genomes of all the microorganisms present in that environment or community, including bacteria, archaea, fungi, viruses, and other microbes, whether they can be cultured in the lab or not. By analyzing the metagenome, scientists can gain insights into the diversity, abundance, and functional potential of the microbial communities present in that environment.

Computer graphics is the field of study and practice related to creating images and visual content using computer technology. It involves various techniques, algorithms, and tools for generating, manipulating, and rendering digital images and models. These can include 2D and 3D modeling, animation, rendering, visualization, and image processing. Computer graphics is used in a wide range of applications, including video games, movies, scientific simulations, medical imaging, architectural design, and data visualization.

'Acari' is the scientific name for a group of small arthropods that includes ticks and mites. These tiny creatures are characterized by having eight legs, lack antennae or wings, and have a hard exoskeleton. They belong to the class Arachnida, which also includes spiders and scorpions.

Ticks are external parasites that feed on the blood of mammals, birds, and reptiles, and can transmit various diseases such as Lyme disease, Rocky Mountain spotted fever, and tick-borne encephalitis. Mites, on the other hand, have diverse habits and lifestyles, with some being parasitic, predacious, or free-living. Some mites are pests that can cause skin irritation and allergies in humans and animals.

Overall, Acari is a significant group of organisms with medical and veterinary importance due to their ability to transmit diseases and cause other health problems.

Genetic recombination is the process by which genetic material is exchanged between two similar or identical molecules of DNA during meiosis, resulting in new combinations of genes on each chromosome. This exchange occurs during crossover, where segments of DNA are swapped between non-sister homologous chromatids, creating genetic diversity among the offspring. It is a crucial mechanism for generating genetic variability and facilitating evolutionary change within populations. Additionally, recombination also plays an essential role in DNA repair processes through mechanisms such as homologous recombinational repair (HRR) and non-homologous end joining (NHEJ).

Mycological typing techniques are methods used to identify and classify fungi at the species or strain level, based on their unique biological characteristics. These techniques are often used in clinical laboratories to help diagnose fungal infections and determine the most effective treatment approaches.

There are several different mycological typing techniques that may be used, depending on the specific type of fungus being identified and the resources available in the laboratory. Some common methods include:

1. Phenotypic methods: These methods involve observing and measuring the physical characteristics of fungi, such as their growth patterns, colonial morphology, and microscopic features. Examples include macroscopic and microscopic examination, as well as biochemical tests to identify specific metabolic properties.

2. Genotypic methods: These methods involve analyzing the DNA or RNA of fungi to identify unique genetic sequences that can be used to distinguish between different species or strains. Examples include PCR-based methods, such as restriction fragment length polymorphism (RFLP) analysis and amplified fragment length polymorphism (AFLP) analysis, as well as sequencing-based methods, such as internal transcribed spacer (ITS) sequencing and multilocus sequence typing (MLST).

3. Proteotypic methods: These methods involve analyzing the proteins expressed by fungi to identify unique protein profiles that can be used to distinguish between different species or strains. Examples include matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) and liquid chromatography-mass spectrometry (LC-MS).

Mycological typing techniques are important tools for understanding the epidemiology of fungal infections, tracking outbreaks, and developing effective treatment strategies. By accurately identifying the specific fungi causing an infection, healthcare providers can tailor their treatments to target the most vulnerable aspects of the pathogen, improving patient outcomes and reducing the risk of drug resistance.

Genetic polymorphism refers to the occurrence of multiple forms (called alleles) of a particular gene within a population. These variations in the DNA sequence do not generally affect the function or survival of the organism, but they can contribute to differences in traits among individuals. Genetic polymorphisms can be caused by single nucleotide changes (SNPs), insertions or deletions of DNA segments, or other types of genetic rearrangements. They are important for understanding genetic diversity and evolution, as well as for identifying genetic factors that may contribute to disease susceptibility in humans.

DNA restriction enzymes, also known as restriction endonucleases, are a type of enzyme that cut double-stranded DNA at specific recognition sites. These enzymes are produced by bacteria and archaea as a defense mechanism against foreign DNA, such as that found in bacteriophages (viruses that infect bacteria).

Restriction enzymes recognize specific sequences of nucleotides (the building blocks of DNA) and cleave the phosphodiester bonds between them. The recognition sites for these enzymes are usually palindromic, meaning that the sequence reads the same in both directions when facing the opposite strands of DNA.

Restriction enzymes are widely used in molecular biology research for various applications such as genetic engineering, genome mapping, and DNA fingerprinting. They allow scientists to cut DNA at specific sites, creating precise fragments that can be manipulated and analyzed. The use of restriction enzymes has been instrumental in the development of recombinant DNA technology and the Human Genome Project.

A genomic library is a collection of cloned DNA fragments that represent the entire genetic material of an organism. It serves as a valuable resource for studying the function, organization, and regulation of genes within a given genome. Genomic libraries can be created using different types of vectors, such as bacterial artificial chromosomes (BACs), yeast artificial chromosomes (YACs), or plasmids, to accommodate various sizes of DNA inserts. These libraries facilitate the isolation and manipulation of specific genes or genomic regions for further analysis, including sequencing, gene expression studies, and functional genomics research.

Statistical models are mathematical representations that describe the relationship between variables in a given dataset. They are used to analyze and interpret data in order to make predictions or test hypotheses about a population. In the context of medicine, statistical models can be used for various purposes such as:

1. Disease risk prediction: By analyzing demographic, clinical, and genetic data using statistical models, researchers can identify factors that contribute to an individual's risk of developing certain diseases. This information can then be used to develop personalized prevention strategies or early detection methods.

2. Clinical trial design and analysis: Statistical models are essential tools for designing and analyzing clinical trials. They help determine sample size, allocate participants to treatment groups, and assess the effectiveness and safety of interventions.

3. Epidemiological studies: Researchers use statistical models to investigate the distribution and determinants of health-related events in populations. This includes studying patterns of disease transmission, evaluating public health interventions, and estimating the burden of diseases.

4. Health services research: Statistical models are employed to analyze healthcare utilization, costs, and outcomes. This helps inform decisions about resource allocation, policy development, and quality improvement initiatives.

5. Biostatistics and bioinformatics: In these fields, statistical models are used to analyze large-scale molecular data (e.g., genomics, proteomics) to understand biological processes and identify potential therapeutic targets.

In summary, statistical models in medicine provide a framework for understanding complex relationships between variables and making informed decisions based on data-driven insights.

Artificial bacterial chromosomes (ABCs) are synthetic replicons that are designed to function like natural bacterial chromosomes. They are created through the use of molecular biology techniques, such as recombination and cloning, to construct large DNA molecules that can stably replicate and segregate within a host bacterium.

ABCs are typically much larger than traditional plasmids, which are smaller circular DNA molecules that can also replicate in bacteria but have a limited capacity for carrying genetic information. ABCs can accommodate large DNA inserts, making them useful tools for cloning and studying large genes, gene clusters, or even entire genomes of other organisms.

There are several types of ABCs, including bacterial artificial chromosomes (BACs), P1-derived artificial chromosomes (PACs), and yeast artificial chromosomes (YACs). BACs are the most commonly used type of ABC and can accommodate inserts up to 300 kilobases (kb) in size. They have been widely used in genome sequencing projects, functional genomics studies, and protein production.

Overall, artificial bacterial chromosomes provide a powerful tool for manipulating and studying large DNA molecules in a controlled and stable manner within bacterial hosts.

DNA barcoding is a method used in molecular biology to identify and distinguish species based on the analysis of short, standardized gene regions. In taxonomic DNA barcoding, a specific region of the mitochondrial cytochrome c oxidase I (COI) gene is typically used as the barcode for animals.

The process involves extracting DNA from a sample, amplifying the target barcode region using polymerase chain reaction (PCR), and then sequencing the resulting DNA fragment. The resulting sequence is then compared to a reference database of known barcode sequences to identify the species of the sample.

DNA barcoding has become a valuable tool in taxonomy, biodiversity studies, forensic science, and other fields where accurate identification of species is important. It can be particularly useful for identifying cryptic or morphologically similar species that are difficult to distinguish based on traditional methods.

Gene order, in the context of genetics and genomics, refers to the specific sequence or arrangement of genes along a chromosome. The order of genes on a chromosome is not random, but rather, it is highly conserved across species and is often used as a tool for studying evolutionary relationships between organisms.

The study of gene order has also provided valuable insights into genome organization, function, and regulation. For example, the clustering of genes that are involved in specific pathways or functions can provide information about how those pathways or functions have evolved over time. Similarly, the spatial arrangement of genes relative to each other can influence their expression levels and patterns, which can have important consequences for phenotypic traits.

Overall, gene order is an important aspect of genome biology that continues to be a focus of research in fields such as genomics, genetics, evolutionary biology, and bioinformatics.

In the context of healthcare, an Information System (IS) is a set of components that work together to collect, process, store, and distribute health information. This can include hardware, software, data, people, and procedures that are used to create, process, and communicate information.

Healthcare IS support various functions within a healthcare organization, such as:

1. Clinical information systems: These systems support clinical workflows and decision-making by providing access to patient records, order entry, results reporting, and medication administration records.
2. Financial information systems: These systems manage financial transactions, including billing, claims processing, and revenue cycle management.
3. Administrative information systems: These systems support administrative functions, such as scheduling appointments, managing patient registration, and tracking patient flow.
4. Public health information systems: These systems collect, analyze, and disseminate public health data to support disease surveillance, outbreak investigation, and population health management.

Healthcare IS must comply with various regulations, including the Health Insurance Portability and Accountability Act (HIPAA), which governs the privacy and security of protected health information (PHI). Effective implementation and use of healthcare IS can improve patient care, reduce errors, and increase efficiency within healthcare organizations.

Multilocus Sequence Typing (MLST) is a standardized method used in microbiology to characterize and identify bacterial isolates at the subspecies level. It is based on the sequencing of several (usually 7-10) housekeeping genes, which are essential for the survival of the organism and have a low rate of mutation. The sequence type (ST) is determined by the specific alleles present at each locus, creating a unique profile that can be used to compare and cluster isolates into clonal complexes or sequence types. This method provides high-resolution discrimination between closely related strains and has been widely adopted for molecular epidemiology, infection control, and population genetics studies of bacterial pathogens.

Biodiversity is the variety of different species of plants, animals, and microorganisms that live in an ecosystem. It also includes the variety of genes within a species and the variety of ecosystems (such as forests, grasslands, deserts, and oceans) that exist in a region or on Earth as a whole. Biodiversity is important for maintaining the health and balance of ecosystems, providing resources and services such as food, clean water, and pollination, and contributing to the discovery of new medicines and other useful products. The loss of biodiversity can have negative impacts on the functioning of ecosystems and the services they provide, and can threaten the survival of species and the livelihoods of people who depend on them.

A CD-ROM (Compact Disc Read-Only Memory) is not a medical term, but a technology term. It refers to a type of optical storage disc that contains digital information and can be read by a computer's CD-ROM drive. The data on a CD-ROM is permanent and cannot be modified or erased, unlike other types of writable discs such as CD-R or CD-RW.

CD-ROMs were commonly used in the past to distribute software, multimedia presentations, reference materials, and educational content. In medical field, CD-ROMs have been used to distribute large databases of medical information, such as clinical guidelines, drug references, and anatomical atlases. However, with the advent of internet and cloud storage technologies, the use of CD-ROMs has become less common in recent years.

Nucleic acid hybridization is a process in molecular biology where two single-stranded nucleic acids (DNA, RNA) with complementary sequences pair together to form a double-stranded molecule through hydrogen bonding. The strands can be from the same type of nucleic acid or different types (i.e., DNA-RNA or DNA-cDNA). This process is commonly used in various laboratory techniques, such as Southern blotting, Northern blotting, polymerase chain reaction (PCR), and microarray analysis, to detect, isolate, and analyze specific nucleic acid sequences. The hybridization temperature and conditions are critical to ensure the specificity of the interaction between the two strands.

Repetitive sequences in nucleic acid refer to repeated stretches of DNA or RNA nucleotide bases that are present in a genome. These sequences can vary in length and can be arranged in different patterns such as direct repeats, inverted repeats, or tandem repeats. In some cases, these repetitive sequences do not code for proteins and are often found in non-coding regions of the genome. They can play a role in genetic instability, regulation of gene expression, and evolutionary processes. However, certain types of repeat expansions have been associated with various neurodegenerative disorders and other human diseases.

I'm sorry for any confusion, but the term "Lemur" is not typically used in medical definitions. It is a common name that refers to primates belonging to the infraorder Lemuriformes. They are native to Madagascar and are divided into five families: Cheirogaleidae (dwarf lemurs), Daubentoniidae (aye-aye), Indriidae (indris, sifakas, and avahis), Lepilemuridae (sportive lemurs), and Lemuridae (true lemurs). If you have any questions related to medical terminology or health concerns, I would be happy to help!

An allele is a variant form of a gene that is located at a specific position on a specific chromosome. Alleles are alternative forms of the same gene that arise by mutation and are found at the same locus or position on homologous chromosomes.

Each person typically inherits two copies of each gene, one from each parent. If the two alleles are identical, a person is said to be homozygous for that trait. If the alleles are different, the person is heterozygous.

For example, the ABO blood group system has three alleles, A, B, and O, which determine a person's blood type. If a person inherits two A alleles, they will have type A blood; if they inherit one A and one B allele, they will have type AB blood; if they inherit two B alleles, they will have type B blood; and if they inherit two O alleles, they will have type O blood.

Alleles can also influence traits such as eye color, hair color, height, and other physical characteristics. Some alleles are dominant, meaning that only one copy of the allele is needed to express the trait, while others are recessive, meaning that two copies of the allele are needed to express the trait.

'Escherichia coli' (E. coli) is a type of gram-negative, facultatively anaerobic, rod-shaped bacterium that commonly inhabits the intestinal tract of humans and warm-blooded animals. It is a member of the family Enterobacteriaceae and one of the most well-studied prokaryotic model organisms in molecular biology.

While most E. coli strains are harmless and even beneficial to their hosts, some serotypes can cause various forms of gastrointestinal and extraintestinal illnesses in humans and animals. These pathogenic strains possess virulence factors that enable them to colonize and damage host tissues, leading to diseases such as diarrhea, urinary tract infections, pneumonia, and sepsis.

E. coli is a versatile organism with remarkable genetic diversity, which allows it to adapt to various environmental niches. It can be found in water, soil, food, and various man-made environments, making it an essential indicator of fecal contamination and a common cause of foodborne illnesses. The study of E. coli has contributed significantly to our understanding of fundamental biological processes, including DNA replication, gene regulation, and protein synthesis.

Gene expression profiling is a laboratory technique used to measure the activity (expression) of thousands of genes at once. This technique allows researchers and clinicians to identify which genes are turned on or off in a particular cell, tissue, or organism under specific conditions, such as during health, disease, development, or in response to various treatments.

The process typically involves isolating RNA from the cells or tissues of interest, converting it into complementary DNA (cDNA), and then using microarray or high-throughput sequencing technologies to determine which genes are expressed and at what levels. The resulting data can be used to identify patterns of gene expression that are associated with specific biological states or processes, providing valuable insights into the underlying molecular mechanisms of diseases and potential targets for therapeutic intervention.

In recent years, gene expression profiling has become an essential tool in various fields, including cancer research, drug discovery, and personalized medicine, where it is used to identify biomarkers of disease, predict patient outcomes, and guide treatment decisions.

Sequence Tagged Sites (STSs) are specific, defined DNA sequences that are mapped to a unique location in the human genome. They were developed as part of a physical mapping strategy for the Human Genome Project and serve as landmarks for identifying and locating genetic markers, genes, and other features within the genome. STSs are typically short (around 200-500 base pairs) and contain unique sequences that can be amplified by PCR, allowing for their detection and identification in DNA samples. The use of STSs enables researchers to construct physical maps of large genomes with high resolution and accuracy, facilitating the study of genome organization, variation, and function.

Physical chromosome mapping, also known as physical mapping or genomic mapping, is the process of determining the location and order of specific genes or DNA sequences along a chromosome based on their physical distance from one another. This is typically done by using various laboratory techniques such as restriction enzyme digestion, fluorescence in situ hybridization (FISH), and chromosome walking to identify the precise location of a particular gene or sequence on a chromosome.

Physical chromosome mapping provides important information about the organization and structure of chromosomes, and it is essential for understanding genetic diseases and disorders. By identifying the specific genes and DNA sequences that are associated with certain conditions, researchers can develop targeted therapies and treatments to improve patient outcomes. Additionally, physical chromosome mapping is an important tool for studying evolution and comparative genomics, as it allows scientists to compare the genetic makeup of different species and identify similarities and differences between them.

A chloroplast genome is the entire genetic material that is present in the chloroplasts, which are organelles found in plant cells and some protists. The chloroplast genome is circular in shape and contains about 120-160 kilobases (kb) of DNA. It encodes for a small number of proteins, ribosomal RNAs, and transfer RNAs that are required for the function of the chloroplasts, particularly in photosynthesis. The chloroplast genome is usually inherited maternally, meaning it is passed down from the mother to her offspring.

The chloroplast genome is relatively simple compared to the nuclear genome, which contains many more genes and regulatory elements. However, most of the proteins required for chloroplast function are actually encoded in the nucleus and imported into the chloroplasts. The study of chloroplast genomes can provide insights into the evolutionary history of plants and their photosynthetic ancestors.

Molecular epidemiology is a branch of epidemiology that uses laboratory techniques to identify and analyze the genetic material (DNA, RNA) of pathogens or host cells to understand their distribution, transmission, and disease associations in populations. It combines molecular biology methods with epidemiological approaches to investigate the role of genetic factors in disease occurrence and outcomes. This field has contributed significantly to the identification of infectious disease outbreaks, tracking the spread of antibiotic-resistant bacteria, understanding the transmission dynamics of viruses, and identifying susceptible populations for targeted interventions.

Basidiomycota is a phylum in the kingdom Fungi that consists of organisms commonly known as club fungi or club mushrooms. The name Basidiomycota is derived from the presence of a characteristic reproductive structure called a basidium, which is where spores are produced.

The basidiomycetes include many familiar forms such as mushrooms, toadstools, bracket fungi, and other types of polypores. They have a complex life cycle that involves both sexual and asexual reproduction. The sexual reproductive stage produces a characteristic fruiting body, which may be microscopic or highly visible, depending on the species.

Basidiomycota fungi play important ecological roles in decomposing organic matter, forming mutualistic relationships with plants, and acting as parasites on other organisms. Some species are economically important, such as edible mushrooms, while others can be harmful or even deadly to humans and animals.

A phenotype is the physical or biochemical expression of an organism's genes, or the observable traits and characteristics resulting from the interaction of its genetic constitution (genotype) with environmental factors. These characteristics can include appearance, development, behavior, and resistance to disease, among others. Phenotypes can vary widely, even among individuals with identical genotypes, due to differences in environmental influences, gene expression, and genetic interactions.

I'm sorry for any confusion, but "North America" is not a medical term. It is a geographical term that refers to the third largest continent in the world, which includes countries such as the United States, Canada, and Mexico, among others. If you have any questions related to medical terminology or health topics, I'd be happy to help with those!

A fruiting body, in the context of mycology (the study of fungi), refers to the part of a fungus that produces spores for sexual or asexual reproduction. These structures are often what we typically think of as mushrooms or toadstools, although not all fungal fruiting bodies resemble these familiar forms.

Fungal fruiting bodies can vary greatly in size, shape, and color, depending on the species of fungus. They may be aboveground, like the caps and stalks of mushrooms, or underground, like the tiny, thread-like structures known as "corals" in some species.

The primary function of a fruiting body is to produce and disperse spores, which can give rise to new individuals when they germinate under favorable conditions. The development of a fruiting body is often triggered by environmental factors such as moisture, temperature, and nutrient availability.

Mutation rate is the frequency at which spontaneous or induced genetic changes (mutations) occur in an organism's DNA or RNA. It is typically measured as the number of mutations per unit of time, such as per generation, per cell division, or per base pair. Mutation rates can vary widely depending on factors such as the specific gene or genomic region involved, the type of mutation (e.g., point mutation, insertion, deletion), and the environmental conditions.

Mutations can have a range of effects on an organism's fitness, from neutral to deleterious to beneficial. A high mutation rate can increase genetic diversity within a population but may also increase the risk of harmful mutations that can lead to diseases or reduced viability. Conversely, a low mutation rate can reduce genetic variation and limit the potential for adaptation to changing environments.

The transcriptome refers to the complete set of RNA molecules, including messenger RNA (mRNA), ribosomal RNA (rRNA), transfer RNA (tRNA), and other non-coding RNAs, that are present in a cell or a population of cells at a given point in time. It reflects the genetic activity and provides information about which genes are being actively transcribed and to what extent. The transcriptome can vary under different conditions, such as during development, in response to environmental stimuli, or in various diseases, making it an important area of study in molecular biology and personalized medicine.

2019) based on molecular sequence data. Sites and ages of specimen (complete list): Casimba, Cuba ~1.8 Mya-11,000 years ago. ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... However, molecular data does not support the traditional arrangement; it is now clear that "near passerines" and "higher ... "An unbiased molecular approach using 3′-UTRs resolves the avian family-level tree of life". Molecular Biology and Evolution. 38 ... Johansson, Ulf S. & Ericson, Per G. P. (June 2003). "Molecular support for a sister group relationship between Pici and ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... "An unbiased molecular approach using 3′-UTRs resolves the avian family-level tree of life". Molecular Biology and Evolution. 38 ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-7. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... This was criticized, and an early DNA sequence study was based on erroneous data and subsequently retracted. There was then an ... They were especially common in the gut with Clostridia DNA sequence counts between 26% and 85% relative to total sequence ... ISBN 0-300-04969-2 Sibley, Charles G., and Jon E. Ahlquist (1991) Phylogeny and Classification of Birds: A Study in Molecular ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 1-5. doi:10.1098/rsbl.2006.0523. PMC 1834003. PMID ... 1991). Phylogeny and Classification of Birds: A Study in Molecular Evolution Archived 2020-10-13 at the Wayback Machine. Yale ... Molecular Phylogenetics and Evolution. 37 (2): 327-346. doi:10.1016/j.ympev.2005.04.010. ISSN 1055-7903. PMID 15925523. ... and classification of the Accipitridae based on DNA sequences of the RAG-1 exon". Journal of Avian Biology. 38 (5): 587-602. ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... "An unbiased molecular approach using 3'UTRs resolves the avian family-level tree of life". Molecular Biology and Evolution. 38 ... sequenced 3-prime untranslated region (3'UTR) from 429 species and 379 genera of birds found support of Columbaves in their ... A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing. Nature (2015). doi:10.1038/nature15697 ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... Johansson, Ulf S.; Ericson, Per G.P. (2003). "Molecular support for a sister group relationship between Pici and Galbulae ( ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... 22 October 2015). "A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing". Nature. 526 (7574 ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... More recent molecular studies support their grouping together in Eurypygimorphae, which is usually recovered as the sister ... 2015) A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing. Nature 526, 569-573. Suh, ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... Molecular Phylogenetics and Evolution. 56 (2): 698-706. doi:10.1016/j.ympev.2010.04.016. PMID 20399870. v t e (Articles with ... using targeted next-generation DNA sequencing". Nature. 526 (7574): 569-573. Bibcode:2015Natur.526..569P. doi:10.1038/ ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... "An unbiased molecular approach using 3'UTRs resolves the avian family-level tree of life". Molecular Biology and Evolution. 38 ... Molecular Biology and Evolution. 23 (#6): 1144-1155. CiteSeerX 10.1.1.113.4549. doi:10.1093/molbev/msj124. PMID 16533822. ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... molecular and paleontological data. Many species are monogamous and are known for their courtship displays, with the pair ... Recent molecular studies have suggested a relation with flamingos while morphological evidence also strongly supports a ... 1990): Distribution and taxonomy of the birds of the world: A Study in Molecular Evolution. Yale University Press, New Haven, ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... Johansson, Ulf S.; Ericson, Per G.P. (2003). "Molecular support for a sister group relationship between Pici and Galbulae ( ... Witt, C.C. (2004), Rates of Molecular Evolution and their Application to Neotropical Avian Biogeography, Ph.D. dissertation, ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... Molecular investigation of the Bucconidae in 2004 indicated that the nunlets (genus Nonnula) diverged from the common ancestor ... Johansson, Ulf S. & Ericson, Per G.P. (2003). "Molecular support for a sister group relationship between Pici and Galbulae ( ... Witt, C.C. (2004), Rates of Molecular Evolution and their Application to Neotropical Avian Biogeography, Ph.D. dissertation, ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... Johansson, Ulf S. & Ericson, Per G.P. (2003). "Molecular support for a sister group relationship between Pici and Galbulae ( ...
... integration of molecular sequence data and fossils". Biology Letters. rsbl.royalsocietypublishing.org. 2 (4): 543-547. doi: ...
Molecular sequence data exist for two families: Vampyrellidae and Leptophyridae. Frequently, Vampyrella is the only genus ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... "An unbiased molecular approach using 3'UTRs resolves the avian family-level tree of life". Molecular Biology and Evolution: 143 ... The term was coined by Sangster in 2005, in order to properly described the new clade discovered with molecular analyses. It is ... Molecular Phylogenetics and Evolution. 30 (1): 140-151. doi:10.1016/S1055-7903(03)00159-3. PMID 15022765. Mayr, G. (February ...
6 July 2006). "Diversification of Neoaves: integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547 ... "LC White-bellied Go-away-bird Criniferoides leucogaster". BirdLife International Data Zone. 2019. Dale A. Zimmerman, Birds of ...
Molecular sequence data indicate Tadarida is not a monophyletic taxon. The closest relative of Tadarida aegyptiaca of Africa ... "Toward a Molecular Phylogeny for the Molossidae (Chiroptera) of the Afro-Malagasy Region". Acta Chiropterologica. 13 (1): 1-16 ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... "Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling". ... "An unbiased molecular approach using 3′-UTRs resolves the avian family-level tree of life". Molecular Biology and Evolution. 38 ... "An unbiased molecular approach using 3'UTRs resolves the avian family-level tree of life". Molecular Biology and Evolution. 38 ...
December 2006). "Diversification of Neoaves: integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-7 ... Based on molecular sequencing and fossil dating, many species of birds (the Neoaves group in particular) appeared to radiate ... A highly informative sequence of dinosaur-bearing rocks from the K-Pg boundary is found in western North America, particularly ... In North America, the data suggests massive devastation and mass extinction of plants at the K-Pg boundary sections, although ...
... integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC 1834003. ... "An unbiased molecular approach using 3'UTRs resolves the avian family-level tree of life". Molecular Biology and Evolution: 143 ... The group was proposed following an alignment of nuclear intron sequences by Shannon Hackett et al. in 2008. It was formally ...
... integration of molecular sequence data and fossils" (PDF). Biology Letters. 2 (4): 543-7. doi:10.1098/rsbl.2006.0523. PMC ... ISBN 0-19-854012-4. Sibley, Charles G.; Jon E. Ahlquist (1991). Phylogeny and Classification of Birds: A Study in Molecular ... Phylogeny and Classification of Birds: A Study in Molecular Evolution. Yale University Press. ISBN 0-300-04085-7. Accessed 2007 ...
2006). "Diversification of Neoaves: integration of molecular sequence data and fossils". Biology Letters. 2 (4): 543-547. doi: ... This disagreement is in part caused by a divergence in the evidence, with molecular dating suggesting a Cretaceous radiation, a ... In any case, the available data regarding their evolution is still very confusing, partly because there are no uncontroversial ... Attempts made to reconcile the molecular and fossil evidence have proved controversial. One hypothesis as to how modern birds ...
... integration of molecular sequence data and fossils" (PDF). Biology Letters. 2 (4): 1-5. doi:10.1098/rsbl.2006.0523. PMC 1834003 ... Biologists can then use this data to deduce which birds are at risk of lead poisoning. Condor Watch enabled volunteers, or ... Phylogeny and Classification of Birds: A Study in Molecular Evolution Archived October 13, 2020, at the Wayback Machine. Yale ... Neither chick lived to sexual maturity, preventing data collection on their reproductive potential. See Evolutionary ...
... integration of molecular sequence data and fossils" (PDF). Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC ... Recent molecular studies have suggested a relation with grebes, while morphological evidence also strongly supports a ... Molecular Phylogenetics and Evolution. 30 (1): 140-151. doi:10.1016/s1055-7903(03)00159-3. PMID 15022765. Ericson, Per G. P.; ...
... integration of molecular sequence data and fossils" (PDF). Biology Letters. 2 (4): 543-547. doi:10.1098/rsbl.2006.0523. PMC ... 2015). "Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon ... White, Noor D.; Braun, Michael J. (December 2019). "Extracting phylogenetic signal from phylogenomic data: Higher-level ... Some molecular studies do support the grouping of these birds, others offer conflicting positions of the non-apodimorphaean ...
Molecular phylogeny of tribe Dipterocarpeae (family Dipterocarpaceae) based on sequence data of chloroplast and nuclear DNA.. ... The sequence data were obtained through direct sequencing of PCR products. The sequencing reactions were performed by using ABI ... Molecular phylogeny of tribe Dipterocarpeae (family Dipterocarpaceae) based on sequence data of chloroplast and nuclear DNA. ... The sequences of both strands were obtained and matched together to get exact sequences by using Staden Package (Staden et al ...
2019) based on molecular sequence data. Sites and ages of specimen (complete list): Casimba, Cuba ~1.8 Mya-11,000 years ago. ...
Methods in molecular biology, computer analysis of sequence data. Totowa (NJ): Humana; 1994. p. 307-18. ... We sequenced the glmM genes of 47 randomly selected isolates. The glmM phylogenetic trees based on the neighbor-joining (data ... Multilocus sequence typing (MLST) tools were used to delineate clusters of strains by using sequence output available from the ... Mosaicism of the hspA 3′-end sequences. * Figure 3. Neighbor-joining unrooted dendrogram for hspA sequences. The tree includes ...
Among named partner linkages where both persons had an HIV virus sequence available, 33.8% also had a molecular linkage and ... Among named partner linkages where both persons had an HIV virus sequence available, 33.8% also had a molecular linkage and ... molecular linkages in Wisconsin were among persons within the same racial/ethnic, risk, and age groups. ... molecular linkages in Wisconsin were among persons within the same racial/ethnic, risk, and age groups. ...
Sequences in BOLD: 3, barcode compliant sequences: 3. Biology/ecology. Solitary (Fig. 241). Hosts: Elachistidae, three species ... Molecular data. Sequences in BOLD: 3, barcode compliant sequences: 3. Biology/ecology. Solitary (Fig. 241). Hosts: Elachistidae ... Molecular data. Sequences in BOLD: 3, barcode compliant sequences: 3. Biology/ecology. Solitary (Fig. 241). Hosts: Elachistidae ... Molecular data. Sequences in BOLD: 3, barcode compliant sequences. achr inhibitor. April 27, 2018 April 27, 2018. ...
Molecular Sequence Data * Pineal Gland / enzymology* * RNA, Messenger / metabolism * Species Specificity Substances * RNA, ... A major advance in the study of the molecular basis of these changes was the cloning of cDNA encoding the enzyme. This has ... The melatonin rhythm-generating enzyme: molecular regulation of serotonin N-acetyltransferase in the pineal gland Recent Prog ... However, some remarkable differences among species in the molecular mechanisms involved in regulating the enzyme have been ...
To further evaluate their biosynthetic potential, we sequenced the 5,183,331-bp S. tropica CNB-440 circular genome and analyzed ... Molecular Sequence Data * Molecular Structure * Multigene Family * Peptide Synthases / genetics * Phylogeny * Polyenes / ... Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica Proc Natl Acad Sci U S A ... To further evaluate their biosynthetic potential, we sequenced the 5,183,331-bp S. tropica CNB-440 circular genome and analyzed ...
Molecular Sequence Data, Phylogeny, Prevalence, Sapovirus/classification, Sequence Analysis, DNA, Sequence Homology, Swine, ... Molecular Sequence Data; Phylogeny; Prevalence; Sapovirus/classification; Sequence Analysis, DNA; Sequence Homology; Swine; ... Incidence, diversity, and molecular epidemiology of sapoviruses in swine across Europe. *Mark ... We report on the incidence, genetic diversity, and molecular epidemiology of sapoviruses detected in domestic pigs in a ...
Ericson, P. G. et al. Diversification of Neoaves: Integration of molecular sequence data and fossils. Biol. Lett. 2, 543-547 ( ... Zhang, D. et al. PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and ... Data availability. Details of data analyses and accession numbers for sequences retrieved from GenBank have been uploaded as ... chloroform extraction protocol for high-molecular-weight DNA and sequenced using a combination of short and long reads, ...
A putative molecular network associated with colon cancer metastasis constructed from microarray data.. World J Surg Oncol. ... RNA sequencing data can be accessed in the NCBI Gene Expression Omnibus: GSE104395. ... Gene expression data from RNA-Seq and miRNA expression data from Agilent Human miRNA Microarray V19.0 were analysed. We ... Using the TCGA data set, we identified a list of 75 genes that were strongly up-regulated in tumors with chromosome 9p gains ...
Archival necropsy data (,1,000 animals over 24 years) were negative for prior cases of severe T. gondii-associated steatitis ... Archival necropsy data (,1,000 animals over 24 years) were negative for prior cases of severe T. gondii-associated steatitis ... Multilocus sequence typing at 13 loci revealed that all were infected with the same strain of T. gondii, previously ... Multilocus sequence typing at 13 loci revealed that all were infected with the same strain of T. gondii, previously ...
Keywords : amino acid sequence, Diaminopimelic Acid, Humans, Molecular Dynamics Simulation, Molecular Sequence Data, Nod1 ... Center : Amrita Center for Nanosciences and Molecular Medicine Move, Nanosciences. Department : Nanosciences and Molecular ... 5 Year Integrated MSc in Mathematics with Minor in Data Sciences. *5-yr Integrated MSc / 4-yr BSc (Hons) in Physics with a ... MS in Cellular and Molecular Medicine and M.Sc. in Bioinformatics - Dual Degree Programme ...
Computers, biological data (molecular sequences, structures, and other data), websites, and databases are integral to modern ... As our use of DNA sequencing grows, the demand for more DNA sequencing continues to increase, creating pressure to sequence DNA ... Nanopore sequencing methods were not easy to develop. The first commercial system for nanopore sequencing ( Oxford Nanopore ... One example is DNA sequencing. DNA sequencing has become our most powerful tool for identifying anything of biological origin, ...
... an assembly of consensus sequences that are designed to deal with variation in the human population and uncertainty in the data ... A key point of the reference genome is that it is not a single sequence. Instead it is ... Computers, biological data (molecular sequences, structures, and other data), websites, and databases are integral to modern ... DNA sequence data are interpreted through biochemical experiments or comparisons to other DNA sequences. ...
wild boars; genetic relationships; linkage (genetics); genotype; labeling; duroc; molecular sequence data; product authenticity ... Near-complete mtDNA sequences (16989 bp), excluding the minisatellite present in the displacement loop region (D-loop), were ... Comparison of near-complete mtDNA sequences revealed a total of 57 substitutions and two Indels. Out of them, 32 polymorphisms ...
Molecular Sequence Data, Phylogeny ... METHODS: Data were collected online through the website of the ... The mol-ecule is stabilized by an intra-molecular C-Hcdots, three dots, centeredN inter-action. In the crystal, adjacent mol- ... numerical data, Tobacco Use Disorder/epidemiology/psychology ...
... types of molecular data (immunological distance; DNA hybridization; allozymes; restriction sites, DNA sequences; genomics) (BDM ... 7: Morphological data I -- the importance of incorporating fossils into phylogenetics (BDM) ... April 4: Phylogenetic trees IV: Maximum likelihood; molecular evolution and phylogenetics (KWW) ... LAB: discussion of molecular application papers (students to bring papers from their groups). ...
Figuring out these relationships requires analyzing large amounts of molecular data, such as DNA and protein sequences. ... that can analyze these molecular data from thousands of organisms, simultaneously figuring out how the sequences should be ... "The old way of doing this for a large number of sequences was basically to align the data once, but we can look at many ... Linder and their students tested SATé using computer-generated data and real biological data. The biological data had been ...
Based on a large-scale analysis of molecular data (amino acid sequences), Witek et al. (2009) concluded that Syndermata and ... "Speciation in ancient cryptic species complexes: evidence from the molecular phylogeny of Brachionus plicatilis (Rotifera)". ...
Computers, biological data (molecular sequences, structures, and other data), websites, and databases are integral to modern ... He is well known for his work in statistics and data presentation. You know what "truthiness" is. It is a term coined by ... Thus, higher education has an important role in providing students with employable skills as well as the ability to use data to ... Truth or Truthiness: Distinguishing Fact from Fiction by Learning to Think Like a Data Scientist is a new book by Howard Wainer ...
3, lane 1); this size is consistent with the predicted molecular mass on the basis of sequence data for the mOR37 receptors. ... The underlying molecular mechanisms are totally elusive; in fact, such a role in cell recognition has not been demonstrated for ... These data indicate that olfactory receptor (OR) proteins are indeed present in the axonal processes and nerve terminals of ... The data demonstrate the presence of OR proteins in the axonal processes as previously hypothesized based on the receptor- ...
... molecular studies are difficult due to the absence of genome sequence data for any cephalopod. Our work directly addresses this ... The RA class of the receptors has also been identified within available sequenced molluscan genomes; however no data has been ... Your data extraction is available. Your data extraction with Task ID TASK_ID_PLACEHOLDER is available for download. ... These data are presented in an undergraduate thesis at the Università degli Studi del Sannio for the candidate Silvia Voso who ...
Molecular Sequence Data * Mutagenesis * Site-Directed * Receptors * CCR5/genetics/metabolism * Receptors * CXCR4/genetics/ ...
Molecular Sequence Data * Mutagenesis, Site-Directed * Peptide Library * Protein Binding * Protein Structure, Tertiary ...
Vis forfatter(e) (2008). New data from an enigmatic phylum: evidence from molecular sequence data supports a sister-group ... Vis forfatter(e) (2008). The phylogeny of Rhizocephalan parasites of the genus Heterosaccus using molecular and larval data ( ... Molecular Biology And Evolution 38, 676-685.. *Nunez, J. C. B., Rong, S., Ferranti, D. A., Damian-Serrano, A., Neil, K. B., ... Data fra dette modellsystem kan brukes til å vurdere om biologisk bekjempelse i marine systemer er en mulighet. ...
MATERIAL/METHODS: The polypeptide chains of all the proteins in the Protein Data Bank were transformed into their early-stage ... The sequence-to-structure and structure-to-sequence relation is critical for predicting protein structure. A contingency table ... High values of the rho-coefficient extracted sequences of strong structural determinability and structures of high sequence ... Tetrapetide sequences and structures were expressed by letter codes. The transformation of a contingency table of any size ( ...
... based on molecular sequence data. Molecular Phylogenetics and Evolution, 54: 498-511. ... Relationships among characiform fishes inferred from analysis of nuclear and mitochondrial gene sequences. Molecular ... Description. Morphometric data in Table 1. Small size, largest specimen examined 37 mm SL. Body moderately high, greatest body ...
Molecular sequence data of three genes were analyzed together with morphological characters and resulted in a new ... A subfamily-level study of the Veneridae was carried out, based on DNA sequence data of three genes (16S, COI and H3). ... Phylogeny of venus clams (Bivalvia: Venerinae) as inferred from nuclear and mitochondrial gene sequences. Molecular ... species pairs that are morphologically very similar actually belong to different subfamilies according to molecular data and, ...
  • This Symposium will cover real-world use cases across many areas, including drug discovery and design, R&D, molecular modeling, next-generation sequencing, and bioinformatics. (globus.org)
  • Genes and Tissue Culture Technology - Next Generation Sequencing - Applicatio. (slideshare.net)
  • General understanding of possibilities and limitations of Next Generation Sequencing (NGS) data, with an emphasis on RNA and whole genome/exome sequencing. (uib.no)
  • Familiarity with next-generation sequencing and a basic understanding of molecular biology and/or genetics are desirable. (uib.no)
  • Clinical trials--Data processing Bioinformatics United States. (columbia.edu)
  • The talk will discuss, also from historical and paradigmatic perspective, some computational problems, algorithmic techniques and future goals of bioinformatics, ranging from the genome reconstruction and sequence indexing to the analysis of gene regulation. (helsinki.fi)
  • The main objective of this course is to provide the candidates with the knowledge central for successful application of bioinformatics and data analysis in clinical research on human tissue. (uib.no)
  • This was confirmed by the high similarity (99.2%-100%) of their sequences with those available in GenBank. (who.int)
  • Adding Genbank sequences, we inferred systematic relationships among 1,114 plumularioids, corresponding to 123 nominal species and 17 novel morphospecies in five families of Plumularioidea. (nature.com)
  • Descripciones de secuencias específicas de aminoácidos, carbohidratos o nucleótidos que han aparecido en publicaciones o están incluidas y actualizadas en bancos de datos como el GENBANK, el Laboratorio Europeo de Biología Molecular (EMBL), la Fundación Nacional de Investigación Biomédica (NBRF) u otros archivos de secuencias. (bvsalud.org)
  • Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK , European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories. (bvsalud.org)
  • We compared the sequences of two housekeeping genes ( hspA and glmM ) from these clones with those of 131 unrelated strains from patients living in different geographic regions. (cdc.gov)
  • Clonal descent has been demonstrated by comparing alleles of genes such as vacA , flaA , and flaB of isolates infecting members of the same family ( 10 - 12 ) and by sequencing three housekeeping genes ( ureI , atpA , and ahpC ) ( 13 ). (cdc.gov)
  • Analysis of the sequences of housekeeping genes ( atpD , scoB , glnA and recA ) showed that strains cluster according to their geographic origins ( 15 , 20 ). (cdc.gov)
  • To assess the genetic diversity and relationships between the isolates, we sequenced two housekeeping genes ( glmM and hspA ). (cdc.gov)
  • TARGET investigators sequenced and analyzed microRNA to identify dysregulated genes and assess the utility of microRNA signature for improved outcome prediction. (cancer.gov)
  • A relatively obvious approach to phylogenetic analysis of whole genomes is to extract as many genes as possible from the genome sequences, create a multiple sequence alignment from each of the genes and to concatenate all alignments. (biomedcentral.com)
  • Difficulties with this approach may arise if orthologous genes cannot be identified with certainty or if the combined sequence length is still too small to give well-resolved trees. (biomedcentral.com)
  • Tissues and clinical data used for the TARGET AML project were obtained from patients enrolled on biology studies and clinical trials managed through COG. (cancer.gov)
  • Such data is abundant due to modern molecular biology measurement techniques like high-throughput sequencing. (helsinki.fi)
  • With the advent of high-throughput sequencing the amount of sequence data has exploded, making molecular biology research totally dependent on efficient computation. (helsinki.fi)
  • The science of figuring out these trees, known as systematics, has progressed significantly in the last two decades largely due to advances in computation, genetics and molecular biology. (scienceagogo.com)
  • Vector NTI Advance is a desktop sequence analysis and molecular biology data management system. (va.gov)
  • Hypothesizing common ancestry of each group of taxa in a hierarchic ordering, taxonomists seek diagnostic morphological (but also physiological and molecular) homologous characters for each cluster, and name the resulting assemblages. (nature.com)
  • Impatiens longiaristata (Balsaminaceae), a new species from western Sichuan Province in China, is described and illustrated here based on morphological and molecular data. (researchgate.net)
  • The objective of this study was to combine new and existing genetic data, along with reanalysis of morphological characters, to test the distinctiveness of V . coatlicue . (scielo.br)
  • The synthesis of molecular and morphological data supports the recognition of V . coatlicue as a junior synonym of V . zonata . (scielo.br)
  • A new species of the genus Microhyla is described from Jamun Khadi, Jhapa district of eastern Nepal, based on molecular and morphological comparisons. (mapress.com)
  • Dutta, A.K., Paloi, S., Pradhan, P. & Acharya, K. (2015) A new species of Russula (Russulaceae) from India based on morphological and molecular (ITS sequence) data. (mapress.com)
  • This web-based application performed pairwise comparisons of HIV-1 protease and partial reverse transcriptase to measure sequence relatedness and identify sequences that were highly genetically similar at a genetic distance of ≤0.015 substitutions per site ( 6 , 7 ). (cdc.gov)
  • The Therapeutically Applicable Research to Generate Effective Treatments (TARGET) AML projects elucidate comprehensive molecular characterization to determine the genetic changes that drive the initiation and progression of high-risk or hard-to-treat childhood cancers. (cancer.gov)
  • A Custom Hepatitis A Virus Assay for Whole-Genome Sequencing. (cdc.gov)
  • Unlike most data in natural sciences, the biological sequence data such as DNA and amino acid sequences is discrete rather than continuous by nature. (helsinki.fi)
  • An alignment is the first analytical step, after raw molecular data (typically, DNA sequences converted to amino acid sequences) are obtained. (uncommondescent.com)
  • Phylogeny of the supertribe Nebriitae (Coleoptera: Carabidae) based on analyses of molecular sequence data--some surprises. (pensoft.net)
  • Here, we extend the recently described Genome BLAST Distance Phylogeny (GBDP) strategy to compute phylogenetic trees from all completely sequenced plastid genomes currently available and from a selection of mitochondrial genomes representing the major eukaryotic lineages. (biomedcentral.com)
  • David L. Swofford and Gary J. Olsen, chapter on Phylogeny Reconstruction, in Molecular Systematics (Sinauer, 1990, eds. (uncommondescent.com)
  • Thus, a couple of years later, when I heard Scott Lanyon (at the time, on the staff at the Field Museum in Chicago) state, "The first thing I ask myself, when I see a published molecular phylogeny is, 'How much of this should I believe? (uncommondescent.com)
  • Before a tree, or phylogeny, can be determined, DNA and protein sequence data must be organized. (scienceagogo.com)
  • This species is the sister taxon of Microhyla ornata and can be distinguished by a unique vocalization, morphology and molecular phylogeny. (mapress.com)
  • Determination of Molecular Descriptors from Analysis of Sequence and Genome Data. (forskningsradet.no)
  • We develop algorithms and data structures for the analysis of genome-scale data. (helsinki.fi)
  • Tracing Foodborne Botulism Events Caused by Clostridium botulinum in Xinjiang Province, China, Using a Core Genome Sequence Typing Scheme. (cdc.gov)
  • Vector NTI uses a proprietary local database to provide storage and organization functions for molecules and other objects used in cloning strategies, molecule manipulation and analysis, and sequence analysis. (va.gov)
  • Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. (biomedcentral.com)
  • Nowadays, an increasing number of completely sequenced genomes are available and a growing field of phylogenetic research deals with the question of how to infer reliable phylogenies from this large amount of data to overcome the limitations of single-gene phylogenies. (biomedcentral.com)
  • Molecular phylogenetic analysis based on nuclear ITS and plastid atpB-rbcL sequences shows that the two new species belong to I. sect. (researchgate.net)
  • This, however, led to the discovery that almost half the severe cases of haemophilia A or a fifth of all cases are due to frequently occurring inversions caused by homologous intra-chromosome (-chromatid) recombination between repeated sequences 9.5 kb long. (nih.gov)
  • The Genomics & Sequencing Data Integration, Analysis and Visualization Symposium is a part of the Molecular Medicine Tri-Conference. (globus.org)
  • Please join us for a talk by Ravi Madduri on the subject "Integrated Research Data Management and Analysis in NGS Using Globus Genomics. (globus.org)
  • Globus Genomics is a robust, scale on-demand solution that provides end-to-end research data management for Next-Gen Sequencing Analysis using Galaxy, Globus Online and Amazon Web Services. (globus.org)
  • Analysis of HIV sequence data is a useful tool for characterizing transmission patterns not immediately apparent using traditional public health interview data, even in a state with lower HIV morbidity. (cdc.gov)
  • Furthermore, phylogenetic analysis based on molecular data also support the recognization of this new species. (researchgate.net)
  • Molecular analysis confirmed its placement in sect. (researchgate.net)
  • The Informatics Division , where informatics tools for genomic sequence analysis, sequencing project management, and biological databases are developed and implemented. (umontreal.ca)
  • Since the invention of DNA sequencing in the 1970's, the analysis of molecular biological sequences has been an inspiring source of computational problems, and even a computing machine using DNA molecules has been proposed. (helsinki.fi)
  • Hence biological sequence analysis is, in addition to fields like text processing and information retrieval, another natural application area of combinatorial algorithms for strings (stringology). (helsinki.fi)
  • Alignment is probably the most difficult and least understood component of a phylogenetic analysis from sequence data. (uncommondescent.com)
  • When regions of the sequences are so divergent that a reasonable alignment cannot be attained by manual methods using a sequence editor ("by eye"), those regions should probably be eliminated from the analysis. (uncommondescent.com)
  • This technology offers comprehensive data analysis and provides data management, integration, and scalability. (va.gov)
  • The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. (plos.org)
  • Big data analysis and dimensionality reduction. (uib.no)
  • Specimens were collected from 9 provinces during 2 seasonal activities in 2001-2002, identified morphologically and subjected to PCR assay and direct sequencing. (who.int)
  • Exposure of endothelial cells (EC) to hypoxia results in the increased expression of a distinct set of proteins with molecular masses of 56, 47, 39, 36, and 34 kDa. (nih.gov)
  • To understand the mechanism(s) and significance of the up-regulation of these proteins we have identified the 36-kDa protein by limited amino-terminal amino acid sequencing. (nih.gov)
  • Molecular phylogenies of many taxonomic groups are based on analyses of single loci. (biomedcentral.com)
  • Those who live and work with molecular systematics don't need any introduction to the alignment nightmare. (uncommondescent.com)
  • H. pylori is one of the most genetically diverse bacterial species, displaying from 2.7% to 8.0% of DNA sequence polymorphism ( 14 - 16 ). (cdc.gov)
  • ABSTRACT A diagnostic polymerase chain reaction (PCR) assay using species-specific primers and direct sequencing was used to identify members of the Anopheles maculipennis complex in the north-west and central regions of the Islamic Republic of Iran. (who.int)
  • The molecular data and relative distribution of these species in relation to their vectorial capacity and the epidemiology of malaria in the region are discussed. (who.int)
  • It will enable the creation of much more accurate trees, especially for the Tree of Life, which deals with hundreds of thousands of gene sequences from the millions of species on Earth. (scienceagogo.com)
  • Our results showed that a total of 13 polychaetes species identified in this study exhibited high levels of interspecific variation among 31 analyzed sequences. (scielo.cl)
  • Benchmarking second and third-generation sequencing platforms for microbial metagenomics. (cdc.gov)
  • 2019) based on molecular sequence data. (wikipedia.org)
  • Graph generated 31 August 2019 using data from PubMed using criteria . (cancerindex.org)
  • GBDP-like methods can be used to reliably infer phylogenies from different kinds of genomic data. (biomedcentral.com)
  • Strain relationships within the family were determined by analyzing allelic variation at both loci and building phylogenetic trees and by using multilocus sequence typing. (cdc.gov)
  • Public Health Approach to Big Data in the Age of Genomics: How Can we Separate Signal from Noise? (cdc.gov)
  • But now, after the accumulation of literally tens of thousands of molecular phylogenies - a vast literature groaning on library shelves - a larger audience is waking up to the fact that something may be very amiss in the house of molecular evolution. (uncommondescent.com)
  • Our process is novel because it rapidly and simultaneously aligns sequences and looks for the best phylogenies," says Linder. (scienceagogo.com)
  • To provide a quantum leap in this field, computer scientist Tandy Warnow, biologist Randy Linder and their graduate students, have created an automated computing method, called SATé, that can analyze these molecular data from thousands of organisms, simultaneously figuring out how the sequences should be organized and computing their evolutionary relatedness in as little as 24 hours. (scienceagogo.com)
  • Observational data are useful because we don't understand the pathogenesis of the disease in humans yet. (medscape.com)
  • The overwhelming lesson I brought home from the workshop, aside from the pricey beauty of that part of Cape Cod, was the utterly seat-of-the-pants, lost-in-space nature of molecular sequence alignment methods. (uncommondescent.com)
  • Actually, the sequences don't tell one that (for reasons I'll explore in part 2): for most investigators, an alignment software package such as Clustal-W or Muscle does the job. (uncommondescent.com)
  • El objetivo de este estudio fue utilizar datos moleculares nuevos con datos moleculares previamente publicados en combinación con una reanálisis de los caracteres morfológicos para testear la validez taxonómica de la especie V . coatlicue . (scielo.br)
  • Nuestra síntesis de datos moleculares y morfológicos provee evidencia para reconocer a V. coatlicue como una sinónima mas reciente de V . zonata . (scielo.br)
  • Data quality control: removal of low quality samples, detection of sample outliers and data filtering, identification of mislabeled samples. (uib.no)
  • It is vitally important to get some clinical data from these outbreaks," he told Medscape Medical News . (medscape.com)
  • These SNPs have potential as molecular markers for phylogeographic studies of the epidemiology and spread of the pathogen. (mdpi.com)
  • Epidemiology and Molecular Characteristics of mcr-9 in Citrobacter spp. (cdc.gov)
  • Evaluating the health impact of large scale biological, social, and environmental data is an emerging challenge. (cdc.gov)
  • Twenty years ago, as a 2nd-year graduate student, I attended the first Molecular Evolution Workshop at the Marine Biological Laboratory-Woods Hole. (uncommondescent.com)
  • For their paper, published in Science , Warnow, the researchers tested SATé using computer-generated data and real biological data. (scienceagogo.com)
  • The biological data had been previously aligned manually by other experts. (scienceagogo.com)
  • Many life science organizations and research labs use internal and external informatics resources to store sequencing data. (globus.org)
  • Among named partner linkages where both persons had an HIV sequence available, 33.8% also had a molecular linkage and were deemed plausible transmission partners. (cdc.gov)
  • Of course, selectively eliminating regions opens the door to the criticism that the researcher is arbitrarily "throwing away data. (uncommondescent.com)
  • BLASTN, TBLASTX, or combinations of both are used to locate high-scoring segment pairs (HSPs) between two sequences from which pairwise similarities and distances are computed in different ways resulting in a total of 96 GBDP variants. (biomedcentral.com)
  • The Wisconsin Division of Public Health (DPH) analyzed HIV sequence data generated from provider-ordered drug resistance testing and collected through routine HIV surveillance to identify molecular clusters and describe demographic and transmission risk characteristics among pairs of persons whose sequences were highly genetically similar (i.e., molecular linkages). (cdc.gov)
  • The term Big Data is used to describe massive volumes of both structured and unstructured data that is so large and complex it is difficult to process and analyze. (cdc.gov)
  • In addition, SATé can accurately analyze DNA sequences that are rapidly evolving. (scienceagogo.com)
  • The 21-amino acid sequence from the bovine protein exhibited 90.5% identity with the human sequence of the glycolytic enzyme glyceraldehyde-3-phosphate dehydrogenase (GAPDH). (nih.gov)
  • Figuring out these relationships requires analyzing large amounts of molecular data, such as DNA and protein sequences. (scienceagogo.com)
  • HIV sequence data, generated from provider-ordered drug resistance testing, can be used to understand characteristics of molecular clusters, a group of sequences for which each sequence is highly similar (linked) to all other sequences, and assess whether named partners are plausible HIV transmission partners. (cdc.gov)
  • HIV sequence data derived from standard drug resistance testing are reportable by laboratories to the Wisconsin DPH and are maintained in a secure surveillance database. (cdc.gov)
  • PCP is an important cause of pneumonia in patients newly-diagnosed with HIV in Uganda, is associated with high mortality, and putative molecular evidence of drug resistance is prevalent. (plos.org)
  • HIV-1 sequence data reported in Wisconsin during 2014-2017 for persons with HIV infection diagnosed through August 15, 2017, were analyzed using Secure HIV-TRACE (Secure HIV TRAnsmission Cluster Engine). (cdc.gov)
  • We would counter this argument with the rebuttal that the researcher has already discarded data, in a sense, by choosing to sequence one molecule rather than another because the latter did not evolve at an appropriate rate for the problem of interest. (uncommondescent.com)
  • These sequences have been previously avoided due to concern that the resulting trees would be poor. (scienceagogo.com)